Gene detail

Detailed information of XP_068743472.1 in Montipora capricornis

Genomic Location: chr1:37585420...37587981
NR annotation: XP_020604701.1, lysosomal alpha-mannosidase-like [Orbicella faveolata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60HE9	Lysosomal alpha-mannosidase OS=Macaca fascicularis OX=9541 GN=MAN2B1 PE=2 SV=1
O00754	Lysosomal alpha-mannosidase OS=Homo sapiens OX=9606 GN=MAN2B1 PE=1 SV=3
Q29451	Lysosomal alpha-mannosidase OS=Bos taurus OX=9913 GN=MAN2B1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001985 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01074 all species →	Glyco_hydro_38N	Glycosyl hydrolases family 38 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050843 all species →	Family	Glycosyl Hydrolase Family 38	Interproscan
IPR011330 all species →	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR027291 all species →	Homologous_superfamily	Glycoside hydrolase 38, N-terminal domain superfamily	Interproscan
IPR000602 all species →	Domain	Glycoside hydrolase family 38, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11607 all species →	ALPHA-MANNOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006013 all species →	Biological Process	mannose metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068743472.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068743472.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

77.0Max TPM

17.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	17.47	76.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	76.96
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	50.03
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	49.70
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	41.23
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	30.11
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	28.63
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	28.46
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	26.53
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	26.38
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	26.17
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	25.47
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	23.80
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	22.93
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	21.88
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	21.32
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	16.43
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	13.30
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	12.98
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	12.22
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	11.53
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	10.64
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	7.66
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	7.21
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	6.96
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	6.29
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	6.14
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	5.89
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.05
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	5.01
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.09
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.