Gene detail

Detailed information of XP_068743598.1 in Montipora capricornis

Genomic Location: chr1:37774853...37788130
NR annotation: XP_029190478.1, citrate synthase, mitochondrial-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0GNE0	Citrate synthase, mitochondrial OS=Iguana iguana OX=8517 GN=CS PE=2 SV=1
Q6S9V6	Citrate synthase, mitochondrial OS=Xiphias gladius OX=8245 GN=cs PE=2 SV=1
Q7ZVY5	Citrate synthase, mitochondrial OS=Danio rerio OX=7955 GN=cs PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004333 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00285 all species →	Citrate_synt	Citrate synthase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036969 all species →	Homologous_superfamily	Citrate synthase superfamily	Interproscan
IPR002020 all species →	Family	Citrate synthase	Interproscan
IPR010109 all species →	Family	Citrate synthase, eukaryotic-type	Interproscan
IPR019810 all species →	Active_site	Citrate synthase active site	Interproscan
IPR016142 all species →	Homologous_superfamily	Citrate synthase-like, large alpha subdomain	Interproscan
IPR016143 all species →	Homologous_superfamily	Citrate synthase-like, small alpha subdomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11739 all species →	CITRATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046912 all species →	Molecular Function	acyltransferase activity, acyl groups converted into alkyl on transfer	Interproscan
GO:0004108 all species →	Molecular Function	citrate (Si)-synthase activity	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006101 all species →	Biological Process	citrate metabolic process	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01647	CS, gltA; citrate synthase	EC:2.3.3.1	Glyoxylate and dicarboxylate metabolism	ko00630	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068743598.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

251.6Max TPM

147.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	147.46	251.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	251.58
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	248.41
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	247.32
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	241.75
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	238.38
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	233.45
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	218.61
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	213.41
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	194.22
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	189.40
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	184.84
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	182.70
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	181.85
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	181.57
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	174.36
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	173.11
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	165.90
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	162.60
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	161.37
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	156.26
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	154.51
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	152.33
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	151.73
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	151.71
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	151.40
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	150.34
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	147.15
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	142.01
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	65.98
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	40.39
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.