Gene detail

Detailed information of XP_068743897.1 in Montipora capricornis

Genomic Location: chr3:7734100...7748583
NR annotation: XP_029189107.1, ferrochelatase, mitochondrial-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068887796.1

TTTCTGCGTCGCGTGTTGGTAAAATGGCTGCTCGACTCCGTTCTAAAGTCATGGCAAATTACAATGTCTCTCTCCAGTTTTCGTCACAAACTCGACAACTTTTATGGAGATGTTTCTTGTCACATGCAGGGAGATGCAGAAATATCGCTACCTCTTCTACAGCTTTGGCCAATGCGGTTGCTCAGCCAAAAATGTTTGATACTTCAGCTGAAGTCAACATGAAACCAAAGACAGGTATCATGCTGTTGAACATGGGAGGGCCAGAGACGACAACTGAAGTTCACAGTTTTCTGTTTCGTCTCTTTTCTGATAGAGATCTTATGGTGTTGCCAGCCCAAAGCAAGATGGCTGCTTGGATTGCAAGGAGAAGAACCCCTAAAATCCAGGAACAGTATGAAAAGATCGGTGGAGGTTCCCCAATCAAAATGTGGACTGAAAAGCAGGGAGAAGGAATGGTGAAACTGTTGGATGAAATGTGTCCTGAAACTGCTCCTCACAAGTTTTACATCGGATTTCGTTACGTGAATCCTCTGACAGAAGATACCCTCGATCAGATGGAAAGAGATGGAATTGAGAGGGCAATAGCATTTACACAGTATCCTCAGTATTCATGCTCAACGACTGGTAGCAGTTTGAATGCAATATACAAACATTACAAGGAAAAAGGATACAATCCACCAATGAAATGGAGTGTAATAGATAGATGGCCAACACATCCAGGGCTAGTAAAGGCATTTGCAGAGAATGTCCAGGCAGAGTTAGAAAAGTTTCCTGCTGATGTCCAGAAGGATGTAGTGATCCTGTTTTCTGCTCACTCACTTCCAATGAAGGTTGTAGAGCGTGGTGATCCTTACCCTCAGGAGGTTGCAGCCACTGTGCAGCGCGTAATGGAAGCACTTAACACCTCCCATCCTTATAGACTTGTATGGCAGTCTAAGGTGGGTCCTATGGCTTGGTTAGGGCCTCAAACGGAGGATGCTATAAAGGGTCTggcaaggaaaggaaagaaacacaTCCTGTTGGTTCCCATTGCATTTACCTCTGACCACATCGAGACACTTCATGAGCTGGACATAGAGTATTCAGAAGTGGCACATGAGGCTGGCATAGAAAATATACGTCGAGCAGCCTCTTTGAACGACAGTACCACCTTTGTCCATgCAATGGCCGACGTAGTCAAAAGTCATATGGAATCTGGTGTCAACTGTTCCCGTCAACTTCCCCTTCGCTGTCCTTTGTGCGTGAATCCCACATGTGGCCCCGCAAAAGAATTCTTTTTAAACGAAACAATTTAGCATTCAGATGTCATCGCATGAGCCATGTTGTTCAAAGCAGAAGGAAGCTAATCCTGGCAATTTTAGGAGAGACTGAATTTgtagaggtcccatgatttatgagtcaaaaagtgaatgagtcaatgaatcatgagtcaatgagactcacagtcaatatagcaacaatttattgattaaacctaagccctcgtttcagtgattaggcctaagcactctgaaattttagctttcatttatGGTTTGGTTAACTGTACTaactcattgattcattgactctTGACTCATTGGTTCGTAAATAGTGTACTTTCGAAGTTGTAGAGTGGGAATTCTTccccaggaaaaaaaataatctcATTCCCACTACCATTAGGACATAGAAGCGATCgtgaatttttgtttgcaagtgggcaagctgttacttgcCTTCTAGCCGGATAACATGAATCAAAATGGAACGCATTGGTTACTATAAAACGTTTGAGTTCTAAACTTCTACGTTATTACTAAAGCCCAAAAGTAAAgtaattttttcttgttttaattaagaaaatattagaggaaaaaaaagacttcGAGGACGCATATTGAAGTTTTTTAGGTAGCTGGCGAGTTGTTACTAGGGAGCTTTACCAAcaacgacgggaacggcaacgagaacgccatCTCAAAACTTACATTCgcgttattgcaatcacttcgagactattccaggctttttaatatgacaaaggtgtagcaGCCCTCAGGAATTAGAATGAAaccgttatgagcggcgcttaatcTCCAAGTGCTGTCGTTGTCcataaacctcaaatttgacaatttcacgttgttattttgcagacgacggcaaagaaatggacaaaaactAAGAATGCACGtacagagcgtgcaaagctattgtttttgccaactaaatatgcaaatttgtgaccttCCTGTTgccatcgccgttgtcgttgctaaagcttccTACTAGTAGCCTTCTTGACGGATAATGTGAATCAAAATGAGAGGCATTGGTTACTGTCGAACGTTTGAGTTCGAAACTTCCACCTTACTGATAGTGAATATTTTTCTATATTGTTTTCAAGTAATAAAGTAAGAGAGGACCGATATTTAAGCATAGTGGTATTTAAGTTTATGGGCCAGTTCCAGTGTCAACTGGAAGGAGGTAATCATTTTGCCATTTGCTAAGCGTGATGACGTTAAAGATTTTTCGCTCTAATCTGTGGCCAGGATGAGATCTGAACCCGGAGCATCGGAAAACAATGCCAGCGCGATAACCACTGGGCCTCGCTTATTCCAAAATTCGAAACGAGTTTGTAAATCCACTCTGGTTAGAAGTGTGCACTGAGAAGGTTAATGTAAGCAATAGGtgtatttaaataaaatttgcAAATGAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O57478	Ferrochelatase, mitochondrial OS=Xenopus laevis OX=8355 GN=fech PE=1 SV=1
O42479	Ferrochelatase, mitochondrial OS=Gallus gallus OX=9031 GN=FECH PE=1 SV=1
P22600	Ferrochelatase, mitochondrial OS=Bos taurus OX=9913 GN=FECH PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006379 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00762 all species →	Ferrochelatase	Ferrochelatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001015 all species →	Family	Ferrochelatase	Interproscan
IPR033644 all species →	Domain	Ferrochelatase, C-terminal	Interproscan
IPR019772 all species →	Active_site	Ferrochelatase, active site	Interproscan
IPR033659 all species →	Domain	Ferrochelatase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11108 all species →	FERROCHELATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004325 all species →	Molecular Function	ferrochelatase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006783 all species →	Biological Process	heme biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01772	hemH, FECH; protoporphyrin/coproporphyrin ferrochelatase	EC:4.98.1.1 EC:4.99.1.9	Porphyrin metabolism	ko00860	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068743897.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

99.7Max TPM

42.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	42.62	99.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	99.73
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	99.53
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	94.41
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	92.79
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	81.29
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	81.07
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	69.79
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	68.24
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	67.88
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	61.23
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	56.41
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	47.01
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	46.07
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	45.59
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	45.06
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	44.75
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	41.36
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	41.17
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	38.81
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	37.90
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	36.27
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	34.17
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	33.79
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	33.35
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	32.46
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	29.65
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	20.05
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	19.39
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	18.60
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	16.56
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.