Gene detail

Detailed information of XP_068745021.1 in Montipora capricornis

Genomic Location: chr3:30890933...30897773
NR annotation: XP_015762603.1, PREDICTED: ELAV-like protein 1-B [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068888920.1

ATAGGTCGCAGTTGtacgccattttgttttttcccatgTGTGTCGTGAAAAGCCCTAACAATTGGTTGACTTTTGACCAACGAAAAGCATTTGAAAGAAAGaaTTTAATAAAGTAAAGCCAAACGTCCCAGAAATCCTTTTTGTGCAGCTTTCCTAAGGCACCTCTAGCAGGCCAAGGAAACCAAAATATTTGTATCCCTTGCTTAAAATTTATTTCTACTATGGCAGAAGCAGGAGTCCCTCATAGTGATGCGACTGAAAACAACACCAACTTGATAATCAACTACTTGCCACAGAGTTTGAGTGATGCAGACTTCAGGGCTCTCTTTCAGTCGATTGGCCCAACCAAATCATGCAAAATTTGTCGACACAAGTCAACTGGATACAGCTATGGTTTTGGGTTCGTGGATTATTTTACGCCTGAGCATGCTCAGTTGGCTATTGATACCCTTAATGGTCACCAACTTGAAAACAAGTTCATTAAGGTGGCTTTGTCAAGGAAAGGAGGGGAAAGGAGTAAGGGAGCAAACTTGTATATACGTAATATCCCAAGATCATGGACATCTGAGGAACTCAGGGAACTCTTTAAACCTTATGGTAACATTATTAATAGCAAGGTACTCACAGAGCCAATGTCAGGGTGCTCGAAGGGTGTTGGGTTTATTCTTTATGACCTGAAATCTGAAGCTGAAACCGCTATAAATGCCATAAATAATACCATTCCTGCTGGGTGCTCAGAGGTAATGTATGTTCGTTTTGCCGATGAGGGCATTAGTAAACTGAAGTCCCCTGGAGCCGCCAGCCCAGCTGGTGTTCCTGAGCGGCCAAGTTTTAATCTTGGTGAGCAACAGTATCACCAAGGTGCAATTGGTCCTATGGGACAAGCACTCATGAATCGTCGTGCCAATCGATTTAACCCAATGTTTGGGGGCCCCCAAATTCCTCCACCATCAGGCTTTAACCAGATGTCTTCTGAAACTAGTGGAGGCTATACCCTGTTCGTTTACAACATTGGAGCAAGTGCAACGCAAGCTTCAGTTTATAAACTCTTTGCACCATATGGTGAAGTAACAAAGGTAAATGTCATGTGGGATTATGAAAAGGGGCAGTCCAAAGGATTTTGCTTTGTTACTATGGCTGCATTGCAGCAAGCACAGGATGCTATTCGAGCATTAAATGGGTACACATATGATACATATCCCCTGCAAGTTAAGCTTAAGACTCCCAAGATGACATATAGCTAGGTGAAAACCATTGAACACAAGTTAAGTACAGGATCTGGGTAACTGACATTTGACACAAAGATTAATTAATTTAGCTGCTGTAGTTGGGGGGATTTTCATTAAGGCAATGGCATACAATGAAATCCTCAGCACATTTTCGCAAATACTTTATTGAGCAAAATGTCGGTATCACCACAGTCATTGGCTGTACTGCCAACTACTGCCAGTGTTATTAGAGACAATACATGTGTACATACAGGGTTCTTGTGGAGTTTTGCCAGCTACAGTGCACAAACATTAATGTTAATAACTTTTATTTGCATTGAAGAACAGAAAGCACCAACATACAGTCCCACTTAAGAGATCATGCATTTGATTTTTGAAGGATGCGTTGTtgtgcaaatgttttttttccattttacgaCTGATTATCAGTTACATAAGCAACTCAAGTCCATGTAACAAAGCAGTGCAACACTCCTGATGCCACTGATAACAGCTGCAAGTAACAGTAATCTAATAAGATTAGAATCTATTATTGGATACTGAAGTTAAAGTTTGTATTGCAAAGCAGTCATGCTactctggtttgaagaaatttgataAACCTCTACTGACTGAGCGTTAGGGCCATACTGGGGATTATTGGCCCAGTCTGTACAAAAATGCGCTAGGGCCAATATTCcgcagggcccggttgttcgaaagctgattaacgctaatcccttATTAAAAATTTACCAAGGAGTTAATTACTCCACTCCCAAAATAATGCTCttcaacactgatattcggcaaaactttacattagaagaggtcaaacttgaaaaagaaaaataagcaaaagaaactttcaccaaaaagttgaaaaaggaaaccaaagtttacgctaatcatggattaagttaatcggttttcgaacaaccgggcccagtaggGTACCGAGCAAGTGATGTTAGTACTTGTAatgtaagttgtttattatatgagCGATTGGACACTTCTCTGCTTGGTGAATGTTTGTCATCTTTGATCATCTAATTTAAATAATTCTGCTTGCTACAATAATGATTGTACTGTTGTGTGAACAAACTAAATTCCACGTTTTAATAACTTTTTCTCTTTCGCTTAACTTGAATTTCCTGGGAGAGAGTAAAAATACAGAAACAGACCGtcttccatggtaatggtccgtacagtaaaatcccgaccaaaaACCAGGcaatcagagtgctccatttggcttgagaattgcttgccatacaATAATGtatctcaattttttttcaaaagttgcAATCCAAAGACCACTTTGAATATTATTGTAACTTTTCAGGctacatttaattattattttcttcaaatCAGAGGAGCATCAAGCATTGTCTATACAGGATACAGTTCTGCCAAGCAAACTTTCTCATGCATATTATCAAAACCTGTTAGAGCTGAATTCTCACCTAAGAACCCCTTAAGATATTTCCAGTATAAGCACTTTTCCATTTCaagtcacattttttttttaataacttaATGTACAATTGTATGTTCAAAAACAGACTGTCAGTTTGTAACAGATGTCTTGAATGCTAACAGCAAAATTAATGAACTATAACAACATTTAGGGACGCTCATTACATTATTACCATTCGACCCAATTACTTAACATGTTGTCCTCATTTTGTAGATGGGTCAAGTCTATTTTTGACTTAGAAGTACTCTTCATGATTGTATGTTAAAATGGAGTTTTACAAAAGAGTTGCTGCAGTGGCGTTAGGAGTCACCtttcaaaaccaaatttttgaggCTGAACTCTTTGATAATTTGTGTCTGTGAGTGTAGACAAATACTTGTGGATGTTACCTGTAAAGTGTCTATCAGGAAGGTGTTAAATAAATTTCACTATAAATAaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U259	ELAV-like protein 1-B OS=Xenopus laevis OX=8355 GN=elavl1-b PE=1 SV=1
Q6GLB5	ELAV-like protein 1 OS=Xenopus tropicalis OX=8364 GN=elavl1 PE=2 SV=1
P70372	ELAV-like protein 1 OS=Mus musculus OX=10090 GN=Elavl1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001601 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR002343 all species →	Family	Paraneoplastic encephalomyelitis antigen	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR050502 all species →	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025 all species →	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13208	ELAVL2_3_4; ELAV like protein 2/3/4	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.