Gene detail

Detailed information of XP_068745173.1 in Montipora capricornis

Genomic Location: chr3:34490727...34502907
NR annotation: XP_015769931.1, PREDICTED: serine protease HTRA2, mitochondrial-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068889072.1

GGAACGGCGAATTTCGGTCGGAATATTCCAACCGAAATAAGtggaccacctccagaggtgatcccgaatattccggtcggaagaaaccgaaacggacctttccatttgatttccgaCCGAAATCTTTGGCATAATGGCAAGCACCCCTGGGTTCAAAAGCTCAGCAGTCACAGAGAGAGACTAAGTCCTAATCGTTCCCAGATCTCTTAACCCCTCAtccgtcaaaatggcggcaacttCATGGAGAAGGTGGCAAAAATTTGGCCAAATAGAGTGGCTGTCAGGAAGAACGAAAACTAAAAGCATCATTCAGATTTATAGAGTATTAAGTACAGAAACCAAACAATCTACCAACAAATTTCCCTGGCCTTGGATTGGCTCTATTGTGTTAGGTGGTTTTCTTGGTTTTGGAATACCAAAACTGTTCAAACACTGCAAATTGAGCGCAAGCGTAGAGGCCAAAGCCGTTCCTAACGAAGGAAATGTATACAATTCTGATTCACCTCCTCGATCAGCCAGATTTAATTTCATTGCTGATGCTGTGGAAAAAGCTGCACCCGCCGTCGTGAACATTGAAGTAACGGGACGACCCGCGGGATTCGTGTTTGGGTCCCACTCCGGTCCCACAAGCGCTGGTTCAGGATTTATTGTTACTGAAGATGGAATGGTTCTTACTAATGCACATGTAGTGGAAAATGCAATGAACGTTAGTGTTAAGTTGAAAGATGGAAGACATTTCAGCGGCACAGTGATTGATATTGATTTAGAAAATGACTTGGCTGCTGTTAAACTTGATTCCAGCAATAAGaacaTTAAGTTTCCAACTTTAACTCTTGGTTCATCCTCTTCAATTCGACCTGGAGAGTGGGTTGTGGCAATGGGTAGTCCTCTGCAGCTTAGTAACACAATAACAGCAGGAATTGTCAGTACTGTACATCGAGCAGGAGTGGAGATTGGATTGCCAAACAGGGAGTTGGAATACATCCAGACAGATGCTGCTATTAATATTGGAAACTCTGGAGGACCTCTTGTCAACTTGGATGGCCATGTTATTGGTATAAATGCAATAACCATGCGATTTGCAGCTGgaatttccttttccattccaaTCGATTCTGCCAAAGGCTTCCTTTCAAAATCAATAGAAAAAGCCAGGAGTGGAGACTACAGAAGCAGAAATACAAAAAGGCGGCTGGCACCATATCAGCGCTGGTACATTGGGATTACCATGTTGACACTTACACCACAGATCCTTGATGAACTGAGACGGAGAGACCAAAGATTTCATGAAGTTACACATGGGGTGCTTGTTGCACAAATAAATTATGGATCCCCAGCACATAGAGCTGGCCTACGATCAGGTGACATTATCACCAAAATAAATAGCCATGCAACAGAATCATCCATGCAAGTTCACCAGCATGTGCGTAAGGGAGGAACACTCCAAATGGAGGTTACCAGAGGTGAACAAACTCTGCATTTTACAGTCCATCCTGAAGTTGTGGGATAGCTGCATCAAAACATTTTTATCAGTGTTTAGCACCAATAAAAAATGGTGAACTTACAATAATGAGGTTGACAAGGTTTATCTGTTTCTACCATGACTTGCGGCATCTACTGCAACTCATGGCaggggtctgttcagtaatagatcacaagagacgtcaaaatgtggtaagaacatcagtgacacgtGAGatacttttttgttcttaccacattttgacatcatctatgatctattactgaacataTGCGCAGAAACATGGAATCTATTACTTTGTTAAAATTTAATAGATCACCTCTTTGGTTTATTCGTGTAAGTTGCAAATGGACTCTATTTGTTGGACCTGAAAATGTGCCACAAAAGGTGTGGTATGTTAGGCTTCTAATAGCCATTTTTCATTCATCCATTGGTGCAATAAAAAGCCCTTATCTGTCCTTACTGTGGTATCAGTCACCTTTTATTGACAGGGAAATATAAGAGTCACCTTACTATTTTTTATAAATTAAACTGTTACTGGCCAGAACTATAAAAGAACATCAGGGGTTCATACAGTATGTTTACAAAATCACATCACACACTGTATGCACTGGAGTCAGACATAATATACGGTACACGTATTTCCTTTTTCTGGGCCAAAGTTTAGAAAATCTTGCAACAAGAACATAATATGCCTCCCAGTACCTCAAAAGACACACATGAAGTCCTAATTGAAAAAGGGTTTTGAGTAATTTGTTCAACGCTTGTTGTAAACTATAGCTTCAAAGAATAAATACCCACTGAATAGTTTCTGTCAGGattttttattacaaatttcattACCCATCCATACCAATGCATCTTTCTCATCTACCTGAAAACAATATAATGCTTGGAAACTTTCAATAAAATGTGGAACCTATCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0JNK3	Serine protease HTRA2, mitochondrial OS=Bos taurus OX=9913 GN=HTRA2 PE=2 SV=1
B4QZU6	Serine protease HTRA2, mitochondrial OS=Drosophila simulans OX=7240 GN=HtrA2 PE=3 SV=1
B4HEM8	Serine protease HTRA2, mitochondrial OS=Drosophila sechellia OX=7238 GN=HtrA2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002592 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13180 all species →	PDZ_2	PDZ domain	Domain	Interproscan
PF13365 all species →	Trypsin_2	Trypsin-like peptidase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001940 all species →	Family	Peptidase S1C	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22939 all species →	SERINE PROTEASE FAMILY S1C HTRA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0012501 all species →	Biological Process	programmed cell death	Interproscan
GO:0043065 all species →	Biological Process	positive regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08669	HTRA2, PRSS25; HtrA serine peptidase 2	EC:3.4.21.108	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.