Gene detail

Detailed information of XP_068745520.1 in Montipora capricornis

Genomic Location: chr3:44647735...44686319
NR annotation: XP_044180137.1, tetratricopeptide repeat protein 1-like isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068889419.1

attccgggttttcgaccatccaaccgcctgcgtgcaggctagacgacaaaatgaaacaaaattttggaaaaaaagacaccccgaccccgaccccgacgtTCGTCGCCTTTTTCGAAGATGGCGGTGGAAGAGTGGGTTGAACGATTGGAAATGTTAGCTGTAAAGTGGGACAGCGCATGAAATTGGGTCCCAAAGTCAGgtttccaatatggcgtcaaaGCCTGACGAGGAAGCCCAAGACAGCAACAAATCTGTTGAGGAACGTTTTCTCACAGATGAAAACATTAAGAGGAAATTAGCAGtagaagaagaaagagaaagctATGAAGGAAAAGGTAAATTGTCTGAGAACAAACAAATACTTGACAATgagaatttaaatgaaaataactCCGATGGGGAAGAATTTCAAGATGCAATAGAGGATATGAACTTAAAACTGAATGAGAAAAAGGACGTTTGTGGAACGCTAGTAAACGATGCTGACAAAGGAGACGAGGCCAATAAAGATAAAGGGGCAGATGAAGAGCGAGAAACATTTACTTTTGAGGAAAAACAGGAGAGAAAGATTAAGGCCCAAGAATATAAAGAACAAGGCAATGGTTATTTTAAACGATCAGAATATCCAGAAGCAAAAGAATTTTACACAAATGCAATAAAGATTTGTCCAGATGACTTTGCCAAAGAAAAATCCATATTTCATGCCAACAGGGCTGCCTGTTTGGTTAAAATGGACCAATATGAAGAAGCAATAGACGATTGCACAAAAGCTTTAGATCTCAATTCAGATTACATGAAAGTAAGGCTTAGAAGAGCACAATGCTATGAACATGAGGATCGATTGGAAGAAGCATTAGAAGATTATCAGAAAGTATTTGATGCTGATCGTTCTTCTCATGTTGCAAGAGAAGCTTTGATGAGGCTACCAGAACAAATCAGAGTCAAGCACGAGAAAATGAAAGAGGAAATGATGGGGAAACTGAAAGAATTGGGGAATGTCTTTTTACGTCCATTTGGCCTTTCAACTGAGAACTTCAAGGTTCAACAAGATCCCAGTACTGGCGGATACTCTGttaattttcaaaagtgaaCCGAATTGGAAGCGTGCTGGAAAGAGAATTCACTGCACACTTAGTTCGATTATGTGACATTTCTACGCTAACTAATCCAAGAAACAATGAACAACGCCGCTGTGTCACAGGCAGACCAATATACTACAACAATCGATTCATTTGGGTCACGTCTTGCTATGTCTCTTaacacaggcagacaaccccaAGGATGTGAGAGCGTGTGACGTCAAGTTATTTTGAAATAGTTGTAGCAGCCGATTAAACTGATCggagaaaatgttacataaaaacttcaaatggCGACTCTCGGAATTCCGTTTTATGGCAGGTTTTCGATTGAGGCCGGAGGCCGGACGTTTCTTCCGGTgctttcccattccatgtccggtactttcATGCTAATGCTTGAGCggtatgttttattttttattattatagcatttttttacttactttttaaagaaaatttaagtgaactccagccttgccttaGGAAAcgattcttgggttccagaaacactggaaacagcgttCTAAGTGTTCTATTTTAAACATTTCCGGGACCCCAGACCCCGCTAGGTAGCTCGAGCCTTCGGCGCTCGCAAGGGCCCTTGGGTGCCAAAAATATCACTTCCggtactttacaaaactgtcgaaaacctGTTTATGGACAGCCacgtaaataaagttcactcacccactgttttctgcgttgtcctgagtgatttgatgggtcaCTCGAATGGCAGCCTTGGGCACGTGAAAAGTCGATAATTTTGCTAGCATCGTGCCAAAAATCATCGCATTTACACGGCCCTGCAACCTAAAAATCCTGTTCGATTTTCCAGCTTCGCTCGATCAAAATCAAAAAGTTCTGATTTCCCGCAAGAGAGACAAAATAATCAATctgagctttttgattggttgactgATTTTGAACAAATTCCAATGATCGATCACTCCTGTCCCGATcatgacgtcacgcgctctcgcatccttacgGTTGTTTGCCTGTGATTATATCAATGAAGTCAGTCTTACCTGTAAAGATTATTTCCAGTTCTACAAGGTATTGGTCAGGAGATGTTGTGAGGtaggaattttaaaaatgttattgaaaAGAGTAATGAGGAAACTTACTCTTTTCGACGATTAAAACGGCTTTAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99614	Tetratricopeptide repeat protein 1 OS=Homo sapiens OX=9606 GN=TTC1 PE=1 SV=1
Q3ZBR5	Tetratricopeptide repeat protein 1 OS=Bos taurus OX=9913 GN=TTC1 PE=2 SV=1
Q91Z38	Tetratricopeptide repeat protein 1 OS=Mus musculus OX=10090 GN=Ttc1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006930 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052769 all species →	Family	Tetratricopeptide repeat domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46014 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24926	TTC1; tetratricopeptide repeat protein 1	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.