Gene detail

Detailed information of XP_068746401.1 in Montipora capricornis

Genomic Location: chr3:67439392...67468831
NR annotation: XP_029195484.2, ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138043823

ATGATGTTTTCTACTTTGAATCAGTCCTGTTCACGGAATCACTTGCACCTCTCCCGTTTCTTTCGAAAACAATGGACTGAGATTTGGGGAAAATTTCTGCGTTCAGCTGTTTTATCAGCTGGAAAGAGCTGCCTCCCCGTCTCACAATATCTCAGTATTAATTCCAATGCTTTCTCGTATTCGTGTATGCTAACTCTCCAAAGACGAATAAATGTAAGAAAATGTGAATTCCATTCCTCGAGTTGTTTGCTACAAGAAGATACCGTGGAAAACAACAAGTTAAAAGCCGTTACACATAATACAGACGGAGGGATTTTAGAAAACCCAGCCTCTTCTGGTCATAAATGTATGAGTTTATCTTCCTCCTACCAAGAATTGAATAAGCATCACTGTCACACGTTAGATGAACGAATCCAAGGAAGTGGAACCATTCAAAATCGTATCAAACATGACAAATTGGAGAACGGCATTGTGCACCATGCATCGTCTTCAGGATTATTTAACTCTAACCATTTTTCGGAAAGAAAATTAACTTTGGTCAAAGATTGTAAGAGCACATCGTTCCAGAAGACAAATCTTCTCTCACCAGACAAAGTAATGGACATTTTGTTTGACTTTTATGAAGACAGACTTGTCAAAAAAGCAGCGCTTGAAAAGGGCATCAATGGTCTTTTATTTAAGCAGATTTTTAAAGAATTCAGAAGAAAGATTCTTTCTGAAATGGAAGCTGGAAATGATGAAATGCTGAAAGTTTTAAGAAAATCCTATTTCAATTCTGTGTCATCAGATAGTCCATCAAAGCTTTTCCCTGTATTTTTGGCATTTGCACGTCAAGTACATCCCATGTTAAACTGCATTGATCAAGTAAAAAAGATTTCAGACCTGCGTGGTCCTGCTGATTTGTTCTTAGAGGCCAGGGCAATGAAGAGAAGAATTATTTATCATGCTGGTCCCACAAACAGTGGTAAAACGCACACTGCACTTGAGAGATTCAGCGCTGCTGACACAGGGGTATATTGTGGCCCACTTCGGCTGTTAGCGACTGAGGTCTTCAGAAGAACAAATGATGCTGGAATACCATGTGACTTGTTGACTGGTGAGGACAGACAATGGGCGATTTCACCTGAGGAACCTGCCAATCATATTGCTGCAACTGTTGAGATGTGCTCAACAAAGATTTTTTATAACTGTGCAGTGATAGATGAAATTCAGATGATCAGAGATGATGAACGAGGCTGGGCGTGGACAAGGGCTCTTTTGGGTCTGCCCTGTCCAGAAATTCATATTTGTGGTGAACATTCAGCAGTTGATGTTGTTCAAAGATTAATAGCCTCTTGCAATGATGAAATGGAGGTCTGTCATTACGAAAGACTCTCTCCTCTAGAAGTCAAGCAGCATCGTAGTCTTGGTGGAAAGCTTCAAGGTGTGAAGCCTGGGGATTGTGTTGTTTCATTCTCTCAACAAGAGTTGTATCGTTTAAGGAGAGAGATAGAAAAGAAGAGCAGAACGAAATGCGCCATCATTTATGGTGGTCTTCCTCCAGCCACTAAGGTAGAGCAAGCAAGCAAGTTTAATGATCCAGAGGACGACTGCTCTGTGTTGGTAGCATCGGATGCAATTGGAATGGGACTCAATTTGAACATTAAGCGGATTGTGTTCAGTAAACTTTCAAAGTATGATGGTCATGATGTAGTGCTGCTGACTCCTTCTCAAGCTAAACAGATTGCTGGTCGAGCTGGAAGATATGGCTCCAATTATCCCAATGGCGAAGCTTTAACGTTCAAAAAAGAAGATTCAAAGCTTCTACACTCCCTGATAACTGCTCCAACAGAAGATGTTAAGGCAGCAGGGCTAGCGCCAACAATGGAGCAGATTGAGATGCTTTCCCAACAGTTGCCTGATGCGAGTCTTGTCAAACTTTATGACGTTTTTGAAAGCGTGGCGCAGCTGGACGGTGCGAACTATTTCATGTGTGATTTGGAGTTTAAGAAGAAAATAGCCCACAAAATACGCGGCCTCCCGCTTTCCGTAACAGACCAGTACATATTTAGCACGGCGCCCATCAGCACCAAGACAATCGATTTAGCTCCAAAGTTCGCTTTTAATGTGTGTCACGAAATCGCATTAACGTCGTCGAAGTTAAAAAAGTTAATCAAGTGGCCTCCAAAGTCACCCAAATCCCTTGCAGAACTGCAGAAATTGGAAGCGGTACATGAGGGACTAGACCTGTATCTTTGGCTCAGCTACCGTTTTCCTGACATATTTGTGGATGTGGAGCAGATCTGCCACATGCAGCAACGTGTAGAGGGTATCATAGGTGAAGTAGTGTCATTAGACACGCTAAGGAATCTGACAGATCGACGTGTGCGTCGTGAATCGAAGACGATCAAAACCGCCTATACAACAGGAAAACAGCCCCGCCACAGAGCGCGCCTTAGAAATGACTTGAAGTGGCTCAGACGACATAATTATTTGATTTGA

Transcript

rna-XM_068890300.1

ATTATTCAAAGATGGCGAACAACGCTGGAGAGTGAATTTGAGTCATAAAATGATGTTTTCTACTTTGAATCAGTCCTGTTCACGGAATCACTTGCACCTCTCCCGTTTCTTTCGAAAACAATGGACTGAGATTTGGGGAAAATTTCTGCGTTCAGCTGTTTTATCAGCTGGAAAGAGCTGCCTCCCCGTCTCACAATATCTCAGTATTAATTCCAATGCTTTCTCGTATTCGTGTATGCTAACTCTCCAAAGACGAATAAATGTAAGAAAATGTGAATTCCATTCCTCGAGTTGTTTGCTACAAGAAGATACCGTGGAAAACAACAAGTTAAAAGCCGTTACACATAATACAGACGGAGGGATTTTAGAAAACCCAGCCTCTTCTGGTCATAAATGTATGAGTTTATCTTCCTCCTACCAAGAATTGAATAAGCATCACTGTCACACGTTAGATGAACGAATCCAAGGAAGTGGAACCATTCAAAATCGTATCAAACATGACAAATTGGAGAACGGCATTGTGCACCATGCATCGTCTTCAGGATTATTTAACTCTAACCATTTTtcggaaagaaaattaactttgGTCAAAGATTGTAAGAGCACATCGTTCCAGAAGACAAATCTTCTCTCACCAGACAAAGTAATGGACATTTTGTTTGACTTTTATGAAGACAGACTTGTCAAAAAAGCAGCGCTTGAAAAGGGCATCAATGGTCTTTTATTTAAGCAGATTTTTAAAGAATTCAGAAGAAAGATTCTTTCTGAAATGGAAGCTGGAAATGATGAAATGCTGAAAGTTTTAAGAAAATCCTATTTCAATTCTGtGTCATCAGATAGTCCATCAAAGCTTTTCCCTGTATTTTTGGCATTTGCACGTCAAGTACATCCCATGTTAAACTGCATTGATCAAGTAAAAAAGATTTCAGACCTGCGTGGTCCTGCTGATTTGTTCTTAGAGGCCAGGGCAATGAAGAGAAGAATTATTTATCATGCTGGTCCCACAAACAGTGGTAAAACGCACACTGCACTTGAGAGATTCAGCGCTGCTGACACAGGGGTATATTGTGGCCCACTTCGGCTGTTAGCGACTGAGGTCTTCAGAAGAACAAATGATGCTGGAATACCATGTGACTTGTTGACTGGTGAGGACAGACAATGGGCGATTTCACCTGAGGAACCTGCCAATCATATTGCTGCAACTGTTGAGATGTGCTCAACAAAGATTTTTTATAACTGTGCAGTGATAGATGAAATTCAGATGATCAGAGATGATGAACGAGGCTGGGCGTGGACAAGGGCTCTTTTGGGTCTGCCCTGTCCAGAAATTCATATTTGTGGTGAACATTCAGCAGTTGATGTTGTTCAAAGATTAATAGCCTCTTGCAATGATGAAATGGAGGTCTGTCATTACGAAAGACTCTCTCCTCTAGAAGTCAAGCAGCATCGTAGTCTTGGTGGAAAGCTTCAAGGTGTGAAGCCTGGGGATTGTGTTGTTTCATTCTCTCAACAAGAGTTGTATCGTTTAAGGAGAGAGATAGAAAAGAAGAGCAGAACGAAATGCGCCATCATTTATGGTGGTCTTCCTCCAGCCACTAAGGTAGAGCAAGCAAGCAAGTTTAATGATCCAGAGGACGACTGCTCTGTGTTGGTAGCATCGGATGCAATTGGAATGGGACTCAATTTGAACATTAAGCGGATTGTGTTCAGTAAACTTTCAAAGTATGATGGTCATGATGTAGTGCTGCTGACTCCTTCTCAAGCTAAACAGATTGCTGGTCGAGCTGGAAGATATGGCTCCAATTATCCCAATGGCGAAGCTTTAACGTTCAAAAAAGAAGATTCAAAGCTTCTACACTCCCTGATAACTGCTCCAACAGAAGATGTTAAGgCAGCAGGGCTAGCGCCAACAATGGAGCAGATTGAGATGCTTTCCCAACAGTTGCCTGATGCGagtcttgtcaaactttatGACGTTTTTGAAAGCGTGGCGCAGCTGGACGGTGCGAACTATTTCATGTGTGATTTGGAGTTTAAGAAGaaaatagCCCACAAAATACGCGGCCTCCCGCTTTCCGTAACAGACCAGTACATATTTAGCACGGCGCCCATCAGCACCAAGACAATCGATTTAGCTCCAAAGTTCGCTTTTAATGTGTGTCACGAAATCGCATTAACGTCGTCGAAGTTAAAAAAGTTAATCAAGTGGCCTCCAAAGTCACCCAAATCCCTTGCAGAACTGCAGAAATTGGAAGCGGTACATGAGGGACTAGACCTGTATCTTTGGCTCAGCTACCGTTTTCCTGACATATTTGTGGATGTGGAGCAGATCTGCCACATGCAGCAACGTGTAGAGGGTATCATAGGTGAAGTAGTGTCATTAGACACGCTAAGGAATCTGACAGATCGACGTGTGCGTCGTGAATCGAAGACGATCAAAACCGCCTATACAACAGGAAAACAGCCCCGCCACAGAGCGCGCCTTAGAAATGACTTGAAGTGGCTCAGACGACATAATTATTTGATTTGAGAGAAGCTGGAGGTCCTTCGACATTCTTCTAGATCTTTTGTCCATGCTGTTGGTGGCGTCAAACAAATAAACCACTTTGATCAGTGGAAAAATGCACTCTTTCTTATCCAACTCTATCCATGcagacattttcttttgtttcgcaGTGACACTAAATTAGTCACGTTATTGCAAGTAATGAGTGAATTTGTCATCGAACTGAACTTTACTTGACGAATGTCCATTTAATTTTAAGATGTTCCttttggggaaaaaagaaacaagaaaaaagaacttggggCAAGCGATGTGTGATGTTGTCAGCCTAAAGCTAGTGAATCCCTGGGGGTAAAAATGATTTAACTTTGCAAAGCTTTATCTCAATGGGTAGATTTCGATCGCGCTGAGTAGGCTTGGATAAATTCTGCTCGTAAAAATCGCTTACTCTGCTCGAAATTCTACTCCTACACGCTTTTTCTGATCGAATTCTGCGCGGTATCCGGAAACTAGCGAGAAAGGTCAGGCCACACTTAAaacaaagctaaccattttgaaatgtgcttaggcttaatcatcGAATTATAGTGATCCTATTCTAGATGCCTGgcaacaaataacaaatattAAAGAAACTTGGTAACTTGTAAATCGTGGTCTAGTAAATAGAAGCTGTTCCTATAAGCCGAAGCTCcgtgttcaaatcctgtccagggactacctttactttttttttttctttttatctgctaccacaagtcctggtaCTTAGACCAGTGTATATAGCAtgtaattatgattatcatATATTCAACGCTGGTACAAACCTTCCAAGTAATTATGTAATTATGTGTTTAATGTGCACCAACCACAGCTCCTGAAAAACAagcaatcacagcggagcatcctgcttaaaaggtgacgcgtaaccagtcgactccatcgcctgatgaagactagcagtatgcagtcgaaacgtcgcgatgtACATCAAAAGTGATCAcgtcgtgagacaaacgagaatactttattattattgtacttcaccacgatgaataacagcaaccttttaaAACAATGATATTAACCTCAAAAAGGCGGACAAGGACAGTACCATTGTTGTCATGGAGGGAGAAAACCTCCTAAACGATGGACAGAGCTACAGACGTCTCACAGAACCCATGGTGAAGGAACTTACAACAAGGTATAGCGCCTCAAAGCTGACCTAGAATACCAGAGTGTTATACACAAACCAGCAATCTCGGGCTGTGATGGACCTACAGAAATAATTTCATCTTTCGTTGACACATTGCTACAGCTAATATCCATATCACAGAAGTCATACCTTAAAGATACAACTGATTTTataaatttcattgaaaaaagaaaggtaaagaaataaacatttcttgtaTCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IG62	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Danio rerio OX=7955 GN=supv3l1 PE=2 SV=1
Q5ZJT0	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Gallus gallus OX=9031 GN=SUPV3L1 PE=2 SV=1
Q8IYB8	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens OX=9606 GN=SUPV3L1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12513 all species →	SUV3_C	Mitochondrial degradasome RNA helicase subunit C terminal	Family	Interproscan
PF18114 all species →	Suv3_N	Suv3 helical N-terminal domain	Domain	Interproscan
PF18147 all species →	Suv3_C_1	Suv3 C-terminal domain 1	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR022192 all species →	Domain	Mitochondrial degradasome RNA helicase subunit, C-terminal domain	Interproscan
IPR041453 all species →	Domain	Suv3, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041082 all species →	Domain	Suv3, C-terminal domain 1	Interproscan
IPR044774 all species →	Domain	Suv3, DEXQ-box helicase domain	Interproscan
IPR050699 all species →	Family	RNA/DNA Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131 all species →	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016817 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0000965 all species →	Biological Process	mitochondrial RNA 3'-end processing	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0045025 all species →	Cellular Component	mitochondrial degradosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17675	SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3	EC:5.6.2.6	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068746401.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

16.6Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	3.34	16.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	16.64
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	6.95
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	6.90
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	6.87
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	6.54
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	6.12
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	5.73
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	5.40
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	5.30
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	4.65
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.56
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.21
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	4.09
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	3.96
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	3.85
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	3.73
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	3.58
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	3.57
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	3.30
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	3.13
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	3.04
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.64
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.56
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.53
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.38
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.23
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.77
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.