Gene detail

Detailed information of XP_068746420.1 in Montipora capricornis

Genomic Location: chr3:68757863...68763223
NR annotation: XP_029201889.2, neutral and basic amino acid transport protein rBAT-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068890319.1

CGTGAACAGCCTAATCAATTTTGCCGCGTGGAGTTTTCGTTTTGTCTGTCAGTCTATTTCGGTAGTGATCATAGTTCTTATCGCTTCTGTTTTCTAGCCGCTCTTTCAGAATGTCGAACGAAGTGGCGTTTAACAGTTTAGAGAAGGACGATGTTAAGATCACGTTCAATGAAGGATCGAGTGATCTTGGAAAGCCAACTGAAGAAGAAGTGGCACAACACAAAAGGACACGTTTGGTCCTCGTGGTCCTGTTTGGTATCATAGTTTTGGCGATGGTTGTTGCAGcggttatcattatcattgtttcTCCGGCATGCGAACAGAAAAAAGGTCTAAAGTCAAACGAGCGTGAAAAAGGAAACGAGACGACCGATGATTTGTGGTGGAAGCGCGCTGTGATGTACCAAATCTATCCTCGATCGTTTTTCGACAGTAATGACGACGGGAATGGTGATTTGAGCGGTATTTCTAAGAAACTAGAATACTTCAGTGGGCTGGGAGTGAACGCTTTTTTGCTTAATCCGATCTACGATCCGAAAGATTTCATGGCGATCGAGAAAACATTGGGATCAATGGAGGACTTCGAGACCTTTGTCAACGAAAGTCACAATAAGGGCTTCAAAGTTATTCTGGATTTCGTCCCTAATCACACTTCAAAACAGCATCCCTGGTTCGTGGAGAGCAGCAAAGACAAAAGTGGCCCCAAGAGCGACTGGTACATTTGGGCAGATGCTGCTGGTGTTGGAGGAAATGGTACTAACCCTCCGAACAACTGGGTTAGTGAGGACGGTGGAAGCGCATGGGAATACGAAAACAGCAGCAGACAACAATTTTACCTTCATCAGTTTAAAAAAGACCAACCAGATTTGAATCTAAGGAACAGAGAAGTCATGAAGGAACTAAAGAAAGTGCTGGAGTTTTGGCTCAGTAAGGGGGTCGATGGTTTTCGAATTAAGGACGTGCAGTACTTCCTGGAGGACGCGAATCTTACGAACGAAACTAAACCTTCACCCAACACATTCAGCCGTAATTTCACATACGATCTTGAGGAGAACCGTAAAATCCTAAAAGAATTTCAAGAGGTTATCAACAATGGCAGCAAGCGTCTGCTGATCGCTGATGTTGAGGGTGCAAGATCCACACAATATTATGACCTGGCAGACATCATACAAAATGTTGGCTTGATCACAAAAGTGAATCGTTCAGGCATGACGCTTTCTCAAGGGGTTAAGAACACTGTTGTAGAATACATTGATGCTGTTCCTGCAGGCAAGGTACCTAACTGGTTGATTGGCAATATAGGCATTGCTCGTGTTGGCAGTCGTCTGGGCCACGATGTAAGGAATGCCATGAATGTTCTTCAGATGACACTCCCTGGCATTGTCACAACATACTATGGTGAAGAGATAGGCATGCTCAATGGAGTTAGTGAGAAAACACCCATGCAATGGTCAGATGAATTATATGCTGGGTTTTCAAGCCAAAGAGCCTGGATGGATGTAGCACCAGGCTACTTGACCTTAAATGTAAAGATTGAGAAGGCAAATACCAACTCATTCTACAACAATTACATAAAGCTTGCTGCCTTGAGAAAAGAACTACCTTTTGCCACTGGTGAGGTTAAAGTTGTGCAGAGTGATCCAAAGGTGTTTGCCTTCCTTCGTAGCCAAGGTGTCCTTCGCTACCTTGTTGTGATCAACTTTGGTGACAAGTGGGATGGAGATATTGCTGGTCTATCAGGCAGAGGCCTCAAAGTGTTTGATAGCGAAGAAGACACAGCTGGAACAGAGCCCGTAGATGTGAACAAGCTCACACTTAATCCTGGTCAGGCAGTGATTGTCAATGGCACCAGTGAACACTGGTTCTTGTCTTAAACCAAAACTGACATAAAATATCAAACCTTGGATTTTTGGTACTTCAACCTAATAATGTTGGGACCAAAGCATTGTGTCAAATGTATCATTAGCCCAGCTTCAGTATTATCAGGTTTTAGTTGTGagataataatatttaaaaatccaTGTAGAAAATTCAGGGTTTAATTCCAAGTCTGCATTGCTTCATTTAGAGAGAAATGTAGCATGATAAAATAAAACTGatggtagggttaggttaggaaTTCAAGTGGGGCAAGATCTTCTTTGAACGTCTACTCAGTCATTATATTATGAGGAAAAATAAGGTTAAAACTGTGATTTCTTTAGGTTTCACACTTTTTGTGTTGATATGAGTCAAGAAATACGTGCGATCAAGTCTTATCTGACCTTTATATCTGCTTAGCCAAAGGAAAaccattaatttaattttagcaCAGGAAAAATACAATCTTGTTATTTTAGACTAGTATTCACAAGAAAGCAAATTTGAAACTTGGGTGTaataaatatagtttacgtcatagacagtgcggcgtacggggttttatgcacgagttgtttgtgtcaaaaacccgaacgagcgaggaacgagcgagtgagggtttttgacacaaacaacgagtgaataaaaccctgtacaaagcactttctatgtcgtaaactgtttattacacataacataagaattttcattaaaatagttttctgaacgcgaattagaaacaaaaactcactaacaatagaaccaaacgcaaatttaatttaattcaataacaaagtacgatttgcacgatttgcacgagatgcacgagtgattggcatggaaacgcctttacgctatcgttgattgctcatacttccacatgtgaaatagctgtacgccattctgattggctgtataggcctttttcacatgtgaaaataaagcgtatagatttgtacaaatgagctttatggaataaaattcgcatgttatgtgtaataattAAGTTATACACAATGTGACACTGTTGTGATGGGTATAGTCACAGTCAAACGCTTATATCAATGGCCATCCGCTTGAAATGTGTACAACAGCGGCCTCTTTAAGGGTTTGATGGAAAGCACTGGAATGTACTATTTCTCCACAGTTTCATCTCCTGTTTACTGTCTAAAGCGGCTAAAAACAAAGTGGTAACAGTTATTCTAAACAGGTGACCGCTCTACGAGTTTTTTTCTACTCAGTCATCAACAGGACTAAACTCTAACCAGGAGCTAAATCAATCTATAGTCTTTGAACCACGTCGCTCTGACGAGCTCCTGTTAATCTCTTCAAACTTCATTTTCTCttcagaaaattaaaatattgttATGTTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64319	Amino acid transporter heavy chain SLC3A1 OS=Rattus norvegicus OX=10116 GN=Slc3a1 PE=1 SV=1
Q91WV7	Amino acid transporter heavy chain SLC3A1 OS=Mus musculus OX=10090 GN=Slc3a1 PE=1 SV=1
Q95WY5	Alpha-glucosidase OS=Culex pipiens OX=7175 GN=CPM1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003162 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00128 all species →	Alpha-amylase	Alpha amylase, catalytic domain	Domain	Interproscan
PF16028 all species →	SLC3A2_N	Solute carrier family 3 member 2 N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR006047 all species →	Domain	Glycosyl hydrolase, family 13, catalytic domain	Interproscan
IPR045857 all species →	Homologous_superfamily	Oligo-1,6-glucosidase, domain 2	Interproscan
IPR031984 all species →	Domain	Solute carrier family 3 member 2, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10357 all species →	ALPHA-AMYLASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068746420.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068746420.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

419.3Max TPM

156.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	156.80	419.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	419.32
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	296.61
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	296.34
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	294.78
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	293.62
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	290.19
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	288.94
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	283.86
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	275.50
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	232.56
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	199.93
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	199.19
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	198.08
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	170.43
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	170.13
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	164.37
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	163.52
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	163.30
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	161.75
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	159.11
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	156.16
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	107.38
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	105.37
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	98.77
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	77.38
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	77.05
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	76.82
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	74.97
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	74.93
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	74.38
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.