Gene detail

Detailed information of XP_068746432.1 in Montipora capricornis

Genomic Location: chr3:69074559...69091676
NR annotation: XP_020627005.1, pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Orbicella faveolata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D051	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus OX=10090 GN=Pdhb PE=1 SV=1
P11966	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus OX=9913 GN=PDHB PE=1 SV=2
P11177	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=PDHB PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004162 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02780 all species →	Transketolase_C	Transketolase, C-terminal domain	Domain	Interproscan
PF02779 all species →	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009014 all species →	Homologous_superfamily	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	Interproscan
IPR033248 all species →	Domain	Transketolase, C-terminal domain	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR005475 all species →	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR027110 all species →	Family	Pyruvate dehydrogenase E1 component subunit beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11624 all species →	DEHYDROGENASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004739 all species →	Molecular Function	pyruvate dehydrogenase (acetyl-transferring) activity	Interproscan
GO:0005967 all species →	Cellular Component	obsolete mitochondrial pyruvate dehydrogenase complex	Interproscan
GO:0006086 all species →	Biological Process	acetyl-CoA biosynthetic process from pyruvate	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00162	PDHB, pdhB; pyruvate dehydrogenase E1 component subunit beta	EC:1.2.4.1	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068746432.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

110.9Max TPM

60.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	60.18	110.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	110.93
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	92.12
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	91.61
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	88.58
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	87.63
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	86.38
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	82.64
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	81.72
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	80.29
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	80.05
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	78.20
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	77.93
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	77.01
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	75.93
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	74.90
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	73.47
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	72.48
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	71.77
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	70.11
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	68.07
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	67.99
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	65.07
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	64.69
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	63.77
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	50.86
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	50.12
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	48.05
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	47.34
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	43.80
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	43.15
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.