Gene detail

Detailed information of XP_068746460.1 in Montipora capricornis

Genomic Location: chr3:70352885...70355047
NR annotation: XP_015768486.1, PREDICTED: hematopoietically-expressed homeobox protein hhex-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D2KQB0	Hematopoietically-expressed homeobox protein HHEX homolog OS=Patiria miniata OX=46514 GN=hhex PE=2 SV=1
P43120	Hematopoietically-expressed homeobox protein Hhex OS=Mus musculus OX=10090 GN=Hhex PE=1 SV=1
Q03014	Hematopoietically-expressed homeobox protein HHEX OS=Homo sapiens OX=9606 GN=HHEX PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008727 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR000047 all species →	Conserved_site	Helix-turn-helix motif	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR051000 all species →	Family	Homeobox DNA-binding	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR020479 all species →	Domain	Homeobox domain, metazoa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24324 all species →	HOMEOBOX PROTEIN HHEX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08024	HHEX, HEX, PRH; homeobox protein HEX	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068746460.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

52.1Max TPM

8.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	8.49	52.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	52.14
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	20.56
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	15.49
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	14.13
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	12.71
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	12.00
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	11.92
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	11.32
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	11.28
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	11.06
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	10.15
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	10.02
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	9.95
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	9.91
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	9.77
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	9.22
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	8.50
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	8.46
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	7.88
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	7.84
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	6.63
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.46
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	5.43
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.38
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.81
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	4.73
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	4.50
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	4.47
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.