Gene detail

Detailed information of XP_068746472.1 in Montipora capricornis

Genomic Location: chr3:70585388...70598256
NR annotation: XP_029195522.2, zinc transporter ZIP13-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068890371.1

ATTACGAGGACCAATAAAAACAAACGCAGTTGGTATTGCGGGCGCAAGTTGCagaaaaacactgaaacgaGGAGAAAACGAGCACAAACGCACAAAACAACACCAGCAAGTACGCCATAATTTAAGCCCGGAAATCGCAGTTGCGGGGTCAGAAGCTCCCACCTTTTTACTGGGCGAACAATATGGCGACAACTTCTTGGATCTCTGCTCTACTCGTCTTATGGCTGTCGGTTCTGGTTTCTGAGACTGCCATGGTAAAAATTCATGATCGGGTTGGACCGCGCGCAGCAGCAACTCAAGCAGAAACTGCCAATTGGTGTTCCTTCGAGCCGTGTAAATATCTCCCCGATTTGTCGAAGATTTTTGCCAAGAAAGAGGCCTGGTTATATTCAATCCCAGCAACAATCCTTGTAGGGCTGGCGGGAGTGTTTCCTCTCCTAGTGATATCTGTGGAAGCTGGACATTCTTTGCGTGAAGGAGtGTCTGCCGACCACCTGAACTTATTCTTGAGCTTTGCAGTTGGTGGTTTGCTAGGAGATGTTTTTCTTCACCTTTTGCCAGAGGCCTGGGCACATGTTCATGATGATGGTGATCTACACACAAATCACTTTTACATTGGTTTTTGGGTGCTGGCTGGAATATGTGGTTTTCTTGCTGTTGAAAAAATCTTTGGAGAGAGTGAAGGCCCAGATAATTCTGCTAAACAAGGAAAGGTTGACAAAGGAAAGGTTGTAAAGAACAGTGATATTTCCAATGGACATGTTGATCACAAAAGTGTAAATGGCAAGGCAGCGTCACTTGCAAATGGACATATTTATAAAGGAACAGCTGTATTGAATGGACTATCAAAATTTAATACACAAGCCAGACAAAGACAAACAGACAAGGACAATCAGTCTAAATCCACAACAGATAATGTAGATTCTCCCAGAGATTCTTGTGAGGAGTCTCCAGCAGAAGAACAAATAAAAGTTATTGGATATCTAAACTTGCTGGCTAATTCtatagacaattttactcatggTCTTGCAGTGGCTGGAAGTTTTCTTGTTAGCACAaagATGGGAATGTGTACCACATGTGCAATACTTCTTCATGAAATACCACACGAGATAGGGGACTTTGCTATCCTTTTGAAATCTGGTTTTAGAAGATGGGATGCTGCTGTTGGACAAGTAGTAACTGCCTCTGCTGGGATCTGTGGAGCTGTTTTTGGTCTTGTAGCAGAACATGCAGGGGATTCAACTGCATGGGTGCTGCCATTTACATCTGGGGGATTCATCTACATTGCTTTGGTTCAAATTGTTCCGGAGCTGCTCCAAGAAACAAGACCAAGgGAATCATTGAAGCAAACGCTCATGATGTTGGCTGGAATAACCTCAATGGGAATTGTGTCTTTCGTTCACTGAAGAGATTTAGGATCAGTTTAGCTTTTAAGTACTTTGATGAATATAGAAAAACTGCAAAGGCATTAAATCTGAATACTGGGCAATTGTTTTAGTTTTGGGTGCTAAAACAgggatttttttacaaaattatttggAGTAGTTTCTAGTTTTTATTTAGTTAAAGCAGAATGATATACAATACTGGTAATCAAGGGCCAGGTAGCATACAGTTGACTATACAAGTTCAGttttttcaaagcatgtttttgTCCTCCTGTGGGCATCTTTGATTGTGGGTGTGCGTACATCTATTTTTGTAATTTCCCCTTAGTTTTGGAATTCTGATACTAGAATATAAGATTGATTAGAAAAAAAGGTTTCCAAGTGAgggaataaaaattattattttggcaGAAGGTAATGTCATTCAAAATAGAGAAACTTGTAACTTTTAGCTTCCTTTTAActaaaatttaactttgaaaatgaatgaaagacaTAGTGAGGAGGTTTTCACAATGGAAAGTGAACCAAATGTAGGAGCTGTCACAGATGTGTGTACTGAGAGATTTACAGTGTGGTTTTTCTCTTTAGTGGTCTTTAAATCAAGCAAgagtaaaatacaaaattgaaaCAAACTACAGACCCTGCCCGCGGAAGGCCTCTGCAGTAGTAAACTCAAGTCGTTGTGGAAGATGACTAAACAAGGTTGCTACATTGTAACAGATGGTAAACTGATAGTAGTTTCTAAGAAGCATTTAAATTGTACACataaacaagtttaaaaatgcaagcaCTTTTTCTGTAGATGCTACTACTACAGACTAAATatattagcattatttttagtgTCCAAACAAAGTGGGCAACTGTTATCATTACTGACATTTGAATAAAGGTATTGTTGTAAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AW42	Zinc transporter ZIP13 OS=Danio rerio OX=7955 GN=slc39a13 PE=2 SV=1
Q5ZI20	Zinc transporter ZIP13 OS=Gallus gallus OX=9031 GN=SLC39A13 PE=2 SV=1
Q96H72	Zinc transporter ZIP13 OS=Homo sapiens OX=9606 GN=SLC39A13 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002061 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02535 all species →	Zip	ZIP Zinc transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003689 all species →	Family	Zinc/iron permease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16950 all species →	ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0006882 all species →	Biological Process	intracellular zinc ion homeostasis	Interproscan
GO:0071577 all species →	Biological Process	zinc ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14719	SLC39A13, ZIP13; solute carrier family 39 (zinc transporter), member 13	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068746472.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

973.6Max TPM

569.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	569.81	973.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	973.56
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	905.48
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	825.27
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	816.30
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	808.03
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	775.75
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	771.52
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	765.51
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	763.95
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	732.19
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	728.93
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	709.93
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	668.29
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	663.49
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	647.82
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	616.33
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	612.33
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	612.24
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	610.67
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	607.65
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	604.22
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	600.52
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	600.04
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	597.75
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	597.50
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	597.29
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	590.94
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	574.52
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	572.54
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	562.50
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.