Gene detail

Detailed information of XP_068746546.1 in Montipora capricornis

Genomic Location: chr3:71623675...71637918
NR annotation: XP_029214200.1, phosphatidylinositol 4-kinase type 2-beta-like isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068890445.1

GTACCATGCGCGTCACAAGATGAAATCATGATTTTGTAAGAAACCAAAATAGGCTATGTGTAGCGGCAACTTCTACGAATGAAATCCCCAGGAAACGATTGGAAAATTTCTAAACGGGGGCATTGGACTAAATATTTAGATGTCATTGAACGAAGGAGGGCGTCCACTAATCGAGTTCGTCTCCGATGGTTGCCCAAATGGGCCCGATGTAGTGCCTTATCACGCTGACCCGGCAAGTTACAGCACAGCAATTGTTGGTGGCTCGCACTATTTCGATAACAGAACTTCTGAACAAAGACCCTTACTTGGCAGATCTCGATCACGAATGGACAGTCATAGTGATAGTGAGTATCAAGGAAACAGTTTTGATGATGCAGAGTTTGCCAGCATCGTACATGCAGCCGAGCAAGCAATCGATGTGGGAATTTTGCCAGAAAGAATATATCAAGGTTCGAGTGGAAGTTACTTcgtcaaagacaaagaaggGAGAAAGATAGGTGTATTTAAACCAAAGGATGAGGAGCCTTATGGACACTTGAATCCAAAATGGACAAAGTGGTGTCACAAGATTTGTTGTCCCTGTTGCTTTGGTAGAAATTGTTTGATTCCAAACCAGGGGTACATGTCAGAAGCTGGAGCCAGCCTTGTGGATCACAAACTTGGTTTAAATGTTGTACCTAAAACGAAGGTTGTTAGACTTGCTAGTGATACATTCAACTACACTGCATTTGATCGTGCAAAAGCAAGGTCAAAAAAGTTTGCTACGGAGAGATTTCCTGATACTTTAGGAAAGCATGTGAAAGCTGGGCTTCCTCCAAAGCTTGGATCATTTCAACTATTTGTTGATGGTTATAAAGATGCAGAGTTTCATCTCAGGAAATTTGAAGTAGAACCACTTCCTACAGCTACTAACAAAGATTTTCTTTTCCaatttcaaaaacttgtttGTCTTGATTACATTATTAGAAATACAGATCGAGGAAATGATAACTGGCTTATAAAATACGAAAAAACTCCTGAGGTGGACAGACAAGTGCAAGGAGAACAGGGGGGTGACTGGGATTATGTTAATACTCCCAAAATATTTGTGGCTGCTATAGATAATGGACTGGCATTTCCATTTAAACATCCTGACTCCTGGAGAGCTTACCCTTTCCACTGGGCGTGGTTACCACAAGCTAAGGAACcttttttggaagaaatttgTGATCTGATTTTACCTCAACTAGCAGATATGAATTTTGTTCAAGATCTTACAGAAGACTTGTACCTCCTATTTCGGGAAGATAAAGGCTTTGATAAATCCTTATTTGAGCGCCAAATGTCAGTTCTCAGGGGACAGATCCTAAATTTAACTCAAGCACTGCGAGACAAGAAATCTCCTCTTCAAGTTGTACAGATGCCTTTTGTAATTGTGGAAAGGAAAAAACTCGACGATGGGGACAGAGTAAGAAGCCAGGGTCACGCTTTCACGCAGAGTTTCCAACAGAGGTCGCCATTCTTTTCGTGGTGCTAACGAACGACTTTTGAAGCAAACGGGGGTGATCTTTGCTGTTTCAAACATGCTACATGTTAAAAAGATAACACGGAAATCACATGATCTGTTATGAAAAAAGTGACAAAATAGTGCTCAGCCCAATGATATGGCGTAAGTAGACTAGGTAATTATTTGCCCAAAGTGACTCAGGACATCTCGTGAGTTTTGCATGTATGAATGTTCAACTAACCCCAGAGGATTAAAGGGTTTTTGGTATTTGCGTACCGCTCCGCAAAACATCAACAGAATAAGAACACGACAGAATAAAGTTCCGCACCCACTCAGAAAGCGCTTTTCTGAGCAAAGTGCAGATCTACCGTTTTAAGGTTACCATTAACTTGTTGTGTTAAGTTGCAAGGTGTGCATGATCTTTGTCTATTTGAGTAATGCAATAACCCGATCCTTTTGTCGCCTAATTATAAGAAAAGGGCTCGCTTCTCTGACAAGCTAGTGTTTTATGGCTAATGCGGTATGTTTAATCCTTGTTTTCTTTGGCTATGTGATGTTTGAGAATTTTTTGAGTTAATTGACGGTAGAGAGTTGTGGACAACGATTCCGCTATTTTGGCAAGGAAGTCTTTGAAAACCTGGCATTATTCGAGGCCGTTTCGTGTTAAgttttctctttaaatgcacttaaaaaaatagttttgtaCCTGTCCAAGGATGTATCTAAGGAAAGGTGGTCTGCACATAAATACGTCAAGTAAAAGGTGACAGTTGGAAATTATCGTAATAGAATTGATGATACGAGTGACGTGCTAATGGCATGGTGTCGAGCGAACAACTAGTCTAGTTTTTATGACACACTCCATAATCAAGGAGGGTTGCTCATGTAATGATTAATAAGTCAATCTATCAATCAATTAAGCtgccaaaataaataaatggaaagTACTTCAATTAAAGAGCTTTTCCGCGCGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28G26	Phosphatidylinositol 4-kinase type 2-beta OS=Xenopus tropicalis OX=8364 GN=pi4k2b PE=2 SV=1
Q6DCQ8	Phosphatidylinositol 4-kinase type 2-beta OS=Xenopus laevis OX=8355 GN=pi4k2b PE=2 SV=1
Q5ZIK0	Phosphatidylinositol 4-kinase type 2-beta OS=Gallus gallus OX=9031 GN=PI4K2B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005955 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00454 all species →	PI3_PI4_kinase	Phosphatidylinositol 3- and 4-kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000403 all species →	Domain	Phosphatidylinositol 3-/4-kinase, catalytic domain	Interproscan
IPR039756 all species →	Family	Type II phosphatidylinositol 4-kinase Lsb6/PI4K2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12865 all species →	PHOSPHATIDYLINOSITOL 4-KINASE TYPE-II	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004430 all species →	Molecular Function	1-phosphatidylinositol 4-kinase activity	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13711	PI4K2; phosphatidylinositol 4-kinase type 2	EC:2.7.1.67	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068746546.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

79.3Max TPM

46.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	46.58	79.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	79.28
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	76.98
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	76.96
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	69.36
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	67.79
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	66.48
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	66.12
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	64.59
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	63.38
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	63.34
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	62.49
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	61.19
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	60.25
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	59.76
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	59.34
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	58.91
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	58.87
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	58.63
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	57.98
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	56.26
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	55.41
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	50.79
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	39.98
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	39.63
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	39.35
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	39.34
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	36.33
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	34.56
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	32.59
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	21.07
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.