Gene detail

Detailed information of XP_068746593.1 in Montipora capricornis

Genomic Location: chr3:71919718...71920706
NR annotation: XP_022804772.1, charged multivesicular body protein 4b-like [Stylophora pistillata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XGW6	Charged multivesicular body protein 4b OS=Xenopus laevis OX=8355 GN=chmp4b PE=2 SV=1
Q6GL11	Charged multivesicular body protein 4b OS=Xenopus tropicalis OX=8364 GN=chmp4b PE=2 SV=1
Q5ZHP5	Charged multivesicular body protein 4b OS=Gallus gallus OX=9031 GN=CHMP4B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003043 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03357 all species →	Snf7	Snf7	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005024 all species →	Family	Snf7 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22761 all species →	CHARGED MULTIVESICULAR BODY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000815 all species →	Cellular Component	ESCRT III complex	Interproscan
GO:0005771 all species →	Cellular Component	multivesicular body	Interproscan
GO:0006900 all species →	Biological Process	vesicle budding from membrane	Interproscan
GO:0007034 all species →	Biological Process	vacuolar transport	Interproscan
GO:0009898 all species →	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0032511 all species →	Biological Process	late endosome to vacuole transport via multivesicular body sorting pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12194	CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068746593.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

838.3Max TPM

63.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	63.59	838.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	838.29
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	111.95
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	110.31
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	107.36
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	101.10
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	95.90
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	86.30
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	54.02
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	53.76
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	53.52
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	43.88
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	43.48
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	42.61
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	41.97
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	40.12
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	38.96
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	38.64
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	35.78
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	35.65
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	35.63
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	34.52
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	34.42
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	32.68
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	32.23
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	28.95
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	27.88
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	24.44
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	23.82
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	21.58
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	19.61
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.