Gene detail

Detailed information of XP_068747368.1 in Montipora capricornis

Genomic Location: chr1:42389537...42403291
NR annotation: XP_029207303.1, estradiol 17-beta-dehydrogenase 8-like isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068891267.1

TGACGAACCCGTAAGAACGTTTGCGTAGGAGGCTAAGTCGCCAAGCGTTCACCTCAAACGGGAATCTCCAAACATGGCGGCAGCTGGTCGGTTAGCTATAGTAACTGgTGGTGCAAGTGGTATTGGCAGAGCTGTGTGTCAGGCATTAGCAAGAGAGGGAGCAAGCATTGTTGTCACAGACCTCAACGATCAAGGTACTCAGGACACTGTTGACAGCTTATCAAAACATGTGGACAGTCGACATTCAAACTATTCACTAGATGTGACAAGTGGAGATGAAATACGCAAAGTTTTGGAATACATAATAAATGGCTATAGGAGACCTCCATGTATTTTAGTCAATTCTGCTGGCATTACTAGAGATGATTTCTTGCTAACAATGGatgaagaaaaatttgacaAAGTTATTCAAGTAAATCTGAAGGGCACATTTCTTATGActcaagcagttgcaaaaatcATGGTTGACCAAGGTGTTGCAAATGGTGCGATTGTTAATTTGGCCAGTATTGTTGGCAAGGTTGGAAATCTTGGTCAAGTAAATTATTCTGCTTCGAAAGCTGGAGTAGAGGGCATGACCAGAACATGTGCAAAGGAGCTTGCAAGGTTTGGTGTCAGATGTAATGCAGTACTACCTGGCTACATTCAGACTCCCATGACTGATGGTGTTCCAGACAAAGTTATAGAAAAGTACAAGAAACGGATTCCTTTGCAGAGACTTGGTAAACCTGCAGATGTGGCTGATGTAGTAACGTTCCTTGCATCTGACAGAAGTAGTTATATCACAGGAACAAGTATTGAAGTTACAGGTGGTCTGTTTATGTGATTGAGATGTGTGTAAATGATGTGGTTGCAGTTAAACCATAAACATTTGGAGGTGGCATGGCACAAGCATGGTGAAGACGTTTGTTTTTGCCTGTTGCAATCCCGCTGAGACCACTCGCTCAATATTTTCTTTGGATGTCCCAGAACGCCTTCTGCCTTCTGGCATCCTGGGTGTTTGACCGTGCTGAACTGAAgtacctgtaaactagcttcACGGCTAAGTGCACTTATCTGTAAACAAAGAATTTATTCTCATTCAAGGGGTTTATGCCCCagagggggtggggaggggagggtactcccttataagggcttaatggggacgtgcggccagccagggtatgtttttcgggatttttgtcttgaagtcttgaacagggtatcgaatttatcatttttttgtcttaatcagggtatcgatttatcaatttttgtcttaaactgggttaaatgtcttaaacagggtatcaaaaatcggaattctgtcttaaaatgggtaggaaaatcagcgatatttgtcttaaacagggtcagggtatgatgggccgcgccgcacctccccaaccagggatacatcgagtacccccccctcccccgggggGTTTACGCATAACTGTCATAAGAGAAATTTTGAGCATTAAGACAAACGTTGCGAAATAAAGGTAGTGGGCTGAAAAACGTGGGGCAATGTTTTGGTTATGTTGTTCTCGATCTTAGGCTCAATATATTCTGAAACATATGTAACAAACCCATTGAAGTAATGCTTGCAAAACATGAGCGTAGATTGGctctcatcaaatggctgaagcgcggccggaggaaaaagtgagaagaagatttctgaCGAGATACTGAGGAGTAGCCCTtatgtgtgctgttaacgtagacttttgatttctgaacaactTTTTAtgatagaaaattcgcgacatagtattgcttttttcgctgttatcttcgtagcaaaaaaaaaactggcctttcgtgatTTCTTCTCAAAGGAACGATATAATGTGGTGGAAATCGAGACTCATCGTCGGGATTTCAGACTGTGATAGCTGTCATGCCAGTCAGTCGGTACTATGAACACACTGTCATAACGTTTTGACTAAAATTTAACTAGAAGCAAATATTGAAATGAAGTAGTAACGACAATGACGATATTTTCCACGGACATATATATGCGTGGTTAGTacttaaagggttaaaacttGCAATATACCACGCCGTTCGGCGCCTCTTTCTTGTAATCAAGgacacccaacgagcaaattaagccagaagcctttgagagacatttctagggtCCTTGTAAtatataaagactgtctaaagagatgtttttatcacctaggagaatttgatctgttcggatatcttagctgaaaattgaagtttccgaaaattttagggagtgatatcttcatttcagaaattgctagctgaacgttaccttctaagaacttccaacctACCCATTTGGTCATctgaaactgctaggtgacctttttaagtgccaaaaatttcaaaaatatcccttccgaaggGAGTACTAGTAactaagggactacttttccctagttccgaatcttttaggtgatgttttagtaatgtaatgtagaaccgaaattcttagaacagtttgactcttcCGAACACATCTTTCTCCGTTGTATGCGCCTGTGTAATTATTTACGGTTCATTGTTACTTAGTTTTAATGTGGGCCTTGTGCCCTAATGGACTCTTAGCCATGTTTAAGCTATGCTCTTGGTGTACTTCCCTCACTGGACTTTGTTCTAGTTAGTTTATGAAACAGTTCTGATAGTGGATTGTTCTAACCTTAGGTGACCTCTGTATCCTTTTCACTTTTTACCTGGGCCCTTTGGCCCTTGCAGATAAACTTTTATCTcatgcaaaaaaaacaaaacaaaaaaaactaagGTCTAGGGCTTGGTGATACTAACCATAACGTTGCATTCCGTGTTAAAGATACAGTAGTGATATTTAGAATGGAAATAGACAATATTCTGTATTTCTTATCTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92506	(3R)-3-hydroxyacyl-CoA dehydrogenase OS=Homo sapiens OX=9606 GN=HSD17B8 PE=1 SV=2
P50171	(3R)-3-hydroxyacyl-CoA dehydrogenase OS=Mus musculus OX=10090 GN=Hsd17b8 PE=1 SV=2
Q6MGB5	(3R)-3-hydroxyacyl-CoA dehydrogenase OS=Rattus norvegicus OX=10116 GN=Hsd17b8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001953 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13561 all species →	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42760 all species →	SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13370	HSD17B8; 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+) / 3-oxoacyl-[acyl-carrier protein] reductase alpha subunit	EC:1.1.1.62 EC:1.1.1.239	Steroid hormone biosynthesis	ko00140	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.