Gene detail

Detailed information of XP_068747489.1 in Montipora capricornis

Genomic Location: chr4:213121...225166
NR annotation: XP_044183950.1, hydroxyacylglutathione hydrolase, mitochondrial-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068891388.1

AGATATTTTATACGCAAAaggtctcaataaaaaagccgtactttcttgtcctggtgactttctcgctttctgTGCCTTTATTTGCCTGATTATTAAAGTCGATTTCAGCGACTTCTCaagggtctttctgcagCTGCGAAGGGCAGCTTCTCAAGTACCTTATCTTCCGAGCCTGGGCCGCCTGTGTTTTGCAGGTTCCACAAGTGCATGATCGATGTGGTGGCTTGCTGGAGTCAGAAGTTTTGCTAAGATCTGCGTTTCTGTCACCTTTAAGGTGTAAAAGCGACTGCAGTACTCGGAACCCTTGCATTCATTAGAAAGAGTGGTATTTCATCCCTGCCTGAGAGTCATTCCAAACCAATTAGTATCTTCACACATTCAAACATGAAAGTTCATGTACTTCCTGCACTTGCTGATAACTACATGTATCTTGTTGTGGATGAAGGAACTCAAGAAGCAGCTATAGTGGACCCAGTGGAGCCCAGAAAgGTTGTTGAAGCAGTTAAAAAAGAAGGAGTGAAACTCACAACTGTTTTAACAACCCATCATCACTGGGATCATGCTGGAGGCAATGTGGAATTGACTGGACTTGTTAAGGGTTTGACAGTGTGTGGAGGAGATGACAGGATTGGGGCCTTGAGTAAGAAAGTTGGGCATGGTGACAAGTTAAAGGTTGGAAATCTGGATGTCAAGTGTCTTTTTACACCTTGTCACACCAGTGGTCATATTTGCTATGTTGTTCATGGTGAACCAAATGCAGTGTTTACtgGTGACACACTCTTTGTGGCTGGATGTGGTAAATTTTTTGAGGGACGTCCTCCTCAAATGTACAAGGCACTGGTTGAGATTTTAGGAACATTACCGAAGGACACACTTGTTTATTGTGGGCATGAGTACACTGAAAGCAATCTCAAGTATGCTGTTCACGTTGAACCAGGCAATCCTGACGTTCACAATGCAATTGAGTGGGCCAAGaacaaaagaaaagcaaatgaACCAACTGTACCCTCAACCATTGGAGATGAGTTGAAGTATAATCCCTTTATGAGAGTCAAAGTGGATAGTGTAAAGAAGTATGCAGGAAAATCAGATCCAGTTGATGTAATGGGATACATCAGACGTGACAAGGACACATTTAGAGCCAAACACTAATTAATGTAATAACATGAtgtaaaaattaatgtattttctCACACACCACTGGTAGCTATGCCAAGCCACCCACCACAACCTGACCTTTATGGTAATCTCAACATATACAAGttaaataaaacattttaccTCAAAACAAGCCTAAGGGAATACGCTTTGAACTACAAGGGTCATGGAAGCACCGATCAACATATAAGTTCAAACATGTGGAAATCTTTGGGTGGGTCGGAGGAAAAAAGGTTAGATATGGCGGACCAACCAAAACAACTGCCCGACTTAGGTCACCTGACCTCTTCCAGGCCCCAGCAGTGTGTGAGAGAAAACATTCTCCACTTATTTCCTTTCACTTAGCTGGTGGAAAATCTCACTTTTTTATCCTATTTGCCAACTACAAATATGAACTCTCTGGTATATCAGGTCATAATGAGGTCAATTGTGGAAACCATTTACTTTCTTGCCAAGCAAGGTGTTTTGTAACTTTGTCTATCTTGTATAATTTAAGTACTATTGGCTCCTAATCTCATATCATGCACAAGAGTGCTGGGAACGGACATGTGCAACAAGTCGGACCAAAATAATTGATCAACTCAGATCGAGTGAAATACAATTTGTTGTTTTCCCCAATTTCACCAAGGGTAGCTTGAAGGTTAGGGCAAGGGTGATTTCTCCAGACCTTATcatttttactttaatttgagGTGAACAATCTAATTTGATCCTGTCTGAATTTTGTACTTGCCTGCTAGTaacatttttttgcatttgttcCTTTGGCCTTCTAGTATTTTTCAACGTGAAGTTGAACCAGAAATATTTAGCCAagtattaaattttgttttataattaCCGGTAATTATCAGGGATGAAGGGTTTGTAGAAACTCTTGTCATCTTTCATCCAAGTGCTTGGTGCATGCAAAAGTCATAAACCATGATTTCTGGGTAGTTTTTCTAGAAAAGGGGAAAACCCCCGCGAGAAAGTCCTGTAATTCAGTAATGCTCCTGATTTCCTGTCTCTAACAGAAATGGAGAAAGTGAATGTTAAATGCCTTGCCTTCAGTTGATACATGTAGCTGGTAATCAATGAAAGTACTAACCCGCAAATTTGCAGATTTGTGGAAAACTCATTCTAGTTCGTATTTTGTTGAAAGAATATAACAATACGTTTtgaaaagtcattttcatccCAAGCATCTTTTGTGGTCAAACTGACTTTGAGAGGTATTGCAGTGTGAGTGTTATGACATACACTAATTCATTGTAGTTGAAACTTTTTAAATTCAGCTTTTTTGGTCTTGCATGGAACTGAAACTCTAGTGAGActagaaaattaaattattaattaaaga

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99KB8	Hydroxyacylglutathione hydrolase, mitochondrial OS=Mus musculus OX=10090 GN=Hagh PE=1 SV=2
Q5ZI23	Hydroxyacylglutathione hydrolase, mitochondrial OS=Gallus gallus OX=9031 GN=HAGH PE=2 SV=1
Q6P963	Hydroxyacylglutathione hydrolase, mitochondrial OS=Danio rerio OX=7955 GN=hagh PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004231 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00753 all species →	Lactamase_B	Metallo-beta-lactamase superfamily	Domain	Interproscan
PF16123 all species →	HAGH_C	Hydroxyacylglutathione hydrolase C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan
IPR017782 all species →	Family	Hydroxyacylglutathione hydrolase	Interproscan
IPR035680 all species →	Domain	Hydroxyacylglutathione hydrolase, MBL domain	Interproscan
IPR032282 all species →	Domain	Hydroxyacylglutathione hydrolase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11935 all species →	BETA LACTAMASE DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004416 all species →	Molecular Function	hydroxyacylglutathione hydrolase activity	Interproscan
GO:0019243 all species →	Biological Process	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01069	gloB, gloC, HAGH; hydroxyacylglutathione hydrolase	EC:3.1.2.6	Pyruvate metabolism	ko00620	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068747489.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

35.6Max TPM

8.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	8.47	35.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	35.56
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	35.40
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	31.83
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	31.29
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	29.39
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	15.53
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	13.15
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	10.17
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	8.92
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	8.56
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	8.00
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	7.63
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	6.98
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	6.41
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	5.85
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	5.80
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	5.77
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	4.71
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	4.64
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	4.60
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.51
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.27
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.07
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.80
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	2.42
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	2.37
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.50
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.41
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.24
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.