Gene detail

Detailed information of XP_068747541.1 in Montipora capricornis

Genomic Location: chr4:856804...862569
NR annotation: XP_022780483.1, cyclin-dependent kinase 2-associated protein 1-like [Stylophora pistillata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068891440.1

AAAACAGATGGAACGTCCGATCAATCCCGACATGCTAGGCGGCTCTCTGAAGAAGATTCTCGCTTCAAATTCTCCTGTCATTGTCCCGTGTAATGGAAAGCATTCAAAGCAAAACACAGCCAGCCGCTCAGGGTGCAAATGTTTTGGCGACTTCGTCTCCTCAAGCAAGCTCCTCATCGGCCGCCGCAACAAACCAGAATTCTCCTGGAAAATACTCTGAACTTCTAGCTGTGATCGAAGAATTAGGCAAGGACATTCGGCCTACGTATGCTGGTAGTAAAAACGCCGCAGAACGATTAAAGAAAGGCATAATGCATGCAAGAGTGCTGGTGAGGGAGTGCTTAGTTGAAACAGACAAATGCGCCAGGCAATAGGATGCTCAAGGCTACCAACAAAAAGAATTTTTCATGGAAGCTGTTATAGTTTGTTGAACCAACCAATCCATGTGCTCTAATAGGCATGGTTTATCCCGATGTGCAAATGAATGTCAACGATGCTGTATTGACTGAATGCAAAACCAACAATGGGAATGGGTTCATTTGAACATGGTTGTTTAAGAATGACAGTTTTGCTGAAAATCAGCTTTGAACTAAGTagatctggaaaaaaaaaacccttttggATGTCCATTCTGTTTCTGATAAATAGTTCTAATATTCAGTCCTTCTAAGggatttcagttttcttttttggtgTTCCAGGATCCTTGCAGAGGCTTGGGCCatgtttaaattaaacaagCCATCTCAGATGTTTGAAAttcaactaataataattaggaaataaaatagattttaaactCTATTTGTGGAATTTATGAAACAATGACAGGGctattcttttggtcagcaccagaGGAGGAGTGAATAGTATCCCTAATGCATTGCATTTCCttttatattatcaactgaaaTTGTGACGTAATCAGTATCTTCCAGCCACCACGCCGAGTTGAGCAGTGCTGGTTTTGTTTGCAGACAGATCTTGATGTCAAGGCTTGGCATTTAGAGAAGCATATTTGTTATACTTTCATTGCGTGTTGGATGAGAAATTTGGCGTCCAGTTGAAGGGTTTTGCATGTGCTAAATAGAAATATAGTGAAGCTCATGTGAGCCATATCGAGTGCTTGAGCAAATGGCGACGATGTGTTATACGCGATGTTGTTGAGAGTCAATATGTGGATGTGTAGGTCTCCCTTGCTGGTATTAATTATGCCTTTGTGCaacataaataaaagaaaagtgaGTTAAATCTGAAATCTGCTTTTGTGTGGTCACTTCGAAAGGCAATTCTCAAAATGCCTGATCACAAGTACCACTTGTGGGCTCATTAAACTAgtgtattttgataaaatcttcaactctTGAAAGTATGAAAAAATGTGGGTCCTTCTCCACCAAAATACTGTTTCACCATCGATCTTCATGAGTGAAGTCTACATTACGAAAAAACTGTAATAATCCGTAATTGTACAAATAACTTTATTGATGACCTTTCTTCAAGTCAATGATCACAGTAAAACAATCAcattttgaataataaaaatataagTAGTCTTCTGTGAGTCTTGATGAACAAATATCAGAAATTGAACACAAGGTGATGAGACAGGTGATGAAGTATTGTGAAGCACAAATCACTCCATTATAATCAACAAAACCTACGAATCAATCATTAAGAAGATTGTGTATTTCATCAACCGAGCGCACCATTTTCCTATTCCTGTTGGGATGAGAATGCCAAAAAGACATctgggatactattcattcTTCCTCTGGGTCACACTAAGGATGAACCAGGAAATCTGGTGTAGCACAAGTTTGATGTGTTGTTTAATATGGGCTTCAGATACTGATCCTCTGAGGCATTCCAAGAAagattgtgtttttttttattcagattGTACTCTTAGGGCCAATTTACACAGTACAGTTTTTGTCGCATGTGACAAGCTTACGAGAGGCCTACAACTGGTTTACGTTTGTCGTGTATGTCAGAAAAAACATTGTAGcctttgaaaacatgttttaaaacactGCGACAATCATACATGTAAGTCATGTCATAGGCCTGTCATACAGCTGTAAGCTGGTCAAGTGCACCAAAAAACCGTACCATGTAAATCAGCCATAACTTTTTCTTATATGAATTTCAATATTTGTAAACGAGATAGTAAAGTGAATGAATAAAAGGTGATGCTTTCCCACTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49119	Cyclin-dependent kinase 2-associated protein 1 OS=Mesocricetus auratus OX=10036 GN=CDK2AP1 PE=2 SV=1
O35207	Cyclin-dependent kinase 2-associated protein 1 OS=Mus musculus OX=10090 GN=Cdk2ap1 PE=1 SV=2
O14519	Cyclin-dependent kinase 2-associated protein 1 OS=Homo sapiens OX=9606 GN=CDK2AP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007166 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09806 all species →	CDK2AP	Cyclin-dependent kinase 2-associated protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017266 all species →	Family	Cyclin-dependent kinase 2-associated protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22607 all species →	DELETED IN ORAL CANCER 1/CDK2-ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26454	CDK2AP1; cyclin-dependent kinase 2-associated protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068747541.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

80.1Max TPM

50.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	50.02	80.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	80.09
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	73.71
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	73.44
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	73.10
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	71.44
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	70.89
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	70.53
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	70.27
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	68.25
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	64.53
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	63.23
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	62.14
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	60.64
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	58.21
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	57.52
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	57.08
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	56.39
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	56.30
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	55.56
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	55.22
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	55.11
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	55.07
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	54.93
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	53.80
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	52.52
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	52.33
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	52.20
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	51.97
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	49.89
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	24.21
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.