Gene detail

Detailed information of XP_068748029.1 in Montipora capricornis

Genomic Location: chr4:7235627...7240849
NR annotation: XP_029194585.2, ribonucleoside-diphosphate reductase subunit M2 B-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P79733	Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio OX=7955 GN=rrm2 PE=1 SV=1
P31350	Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens OX=9606 GN=RRM2 PE=1 SV=1
Q4KLN6	Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus norvegicus OX=10116 GN=Rrm2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003090 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00268 all species →	Ribonuc_red_sm	Ribonucleotide reductase, small chain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030475 all species →	Active_site	Ribonucleotide reductase small subunit, acitve site	Interproscan
IPR000358 all species →	Family	Ribonucleotide reductase small subunit family	Interproscan
IPR009078 all species →	Homologous_superfamily	Ferritin-like superfamily	Interproscan
IPR012348 all species →	Homologous_superfamily	Ribonucleotide reductase-like	Interproscan
IPR033909 all species →	Family	Ribonucleotide reductase small subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23409 all species →	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009263 all species →	Biological Process	deoxyribonucleotide biosynthetic process	Interproscan
GO:0004748 all species →	Molecular Function	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10808	RRM2; ribonucleoside-diphosphate reductase subunit M2	EC:1.17.4.1	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068748029.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

547.8Max TPM

217.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	217.22	547.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	547.77
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	542.24
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	540.70
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	443.43
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	440.33
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	431.12
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	417.89
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	366.64
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	279.78
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	277.71
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	257.90
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	256.29
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	249.70
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	246.11
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	239.78
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	230.33
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	225.65
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	223.42
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	198.18
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	190.96
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	178.23
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	171.67
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	170.89
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	130.20
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	124.22
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	120.45
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	89.40
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	88.77
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	84.84
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	55.39
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.