Gene detail

Detailed information of XP_068748041.1 in Montipora capricornis

Genomic Location: chr1:43556445...43564526
NR annotation: CAH3120832.1, unnamed protein product [Porites lobata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068891940.1

ATGGCTTCCAATAGTTGTTGTAAGTGCATGATCGGTCCTTCGATTTTAAACGCGGATCTCTCCTGCCTGGCTAATGAATGCAACAAATTGCTGGAATGCGGTGCAGATTATCTGCATCTCGATGTAATGGACGGGCATTTTGTACCAAATTTGACTTTTGGTGCTCCACTTGTTAAGTGCTTGAGGAAAAAGGTACCCGATGCTTTTTTCGATATGCACATGATGGTGGCAAATCCAGAGAAGtGGGTGGATGACATGGCCAGTGCTGGGGCAAACCAATACACTTTCCACATAGAGGCAACAGACAAGCCACTTGAATTGATTGAGCAGATAAAAAAGGCAGGAATGAAGGTTGGAGTTGGAGTGAAGCCAAACACACCTGTTGAGTCTGTCCTGCCCTTGGTCAACCTAGTTGACATGGTGCTCATCATGACAGTGGAGCCCGGATTTGGTGGACAAAAATTCATGGCAAATATGATGCCAAAGGTGAAACATCTTAGAACCAATTACAAGGTTTTGGATATAGAAGTGGATGGAGGCATTGGAGAATCGACAATTGAAGCAGCGGCTCAGGCCGGTGCCAATATGATTGTGTCAGGCAGTGCAGTCATCAAAAGTGATAAACCAAAGGAGGTGATTGACACCCTGAGAGCAGTGACGGAAAAATGGATTAAGATAAACAATGAAGCTTGTAATTAATGCAGGGAAAAGGGGGTTAGTGTCAAATTCTTAATAAGTGAAGTATGATTTCACGGGCTGAGGTAAAACTGGAGGCATGCAGTGCAGGCTTGATCTATTTGTTCTAATATTTCAGATCAAGTTTCCGATGGGAAAAGGAAAATGCGTTCAGGGGTGTCAATGCAAAAAAGCTGGGTTAGCTACTCGATGAACCTGGCAGTGAGTTTGGAAAGCAAGGTTTAAGGGAAAGCTcacttaatatgacaagggggGAAATGAAGATATTGAGGGGGGGGCTCCGAAAAATTTTAGACACCCGTAGGGGGGGCTCTGAAAAAATTGTTGGGCTAGGAGGGGAGCTCCAAAAATTTGTATACTTCAAAACCAACACATGACATCATCATACAGATCGGATGGTTTTCAACTCGACAATTTAATGACCTGTGCAACTCAGCTATATCAAGTGTAGTCTCAGTAATTACACTCTTTGTTCATCCCAAAAATGCTttagaaaatttgaaaaatttgaaatgcgcaggggaggaggaggagggggggTCTACCTTCGAGTTTCAATATCTTAATCCCCCCCACCTCCCCCGTGTCATATTAAATGAACTTTCCCTAACAAAACCTTTTTCCCTTCAATGTCTTGGTTGAATTTCAGCCACATACATCCCTGAATGATTATAGTGAGACATCACTGTGACAGTAAatgataattatttaatttccaCCTTGCTTTATCTTTCCTACTCCTCTTGCAATAAATAACACAATtttgtatttgaaaaaagaaatttaaataatctAAACTTAATGAAATAATATGCCAAGTACTTTCCACAAACCCATCAAGTTTGAAAGAAGGGTTTGTTTTAAATTAATACTGGCAAAGTAAACTACACAATCTTATGCCAAAAACAATTACACACACTTGGGTATTATAATGCAAGAGGTAACGCATACATATGGAACAATAAATCTGTAACATAACTAGTTCACATTAAGTGTCATCCTGTTTTAAGAACAGTTGTTGATATAAAGAATGATAAATTCTGAAGCCTAGTTTAAAATACAGTAATCACATGTAGGGAAAAGAACCTTAATACAATGAATCGCTATTATATCCGCTATTATATCCGCTATTAAATTCCGTGGTCATTTGGCACCTTGTCAAATGAAGAAGTTCCATTGTTTTTCATACAGAAAACGTTTTCCATTCTATGCTTGCAGCATTCTCTTTATTCGTCTATCGCAACATTTCTACTTGAAGACCAACAACCTAGGTATCCCCtgtgtatttattttttatcttatttatcACTAATTGTCTTCTTCTTTAGTCTTCCTCCTTTTGTTCATCTCGTAACATGTACC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VEE0	Ribulose-phosphate 3-epimerase OS=Mus musculus OX=10090 GN=Rpe PE=1 SV=1
Q96AT9	Ribulose-phosphate 3-epimerase OS=Homo sapiens OX=9606 GN=RPE PE=1 SV=1
Q5R5Y2	Ribulose-phosphate 3-epimerase OS=Pongo abelii OX=9601 GN=RPE PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003006 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00834 all species →	Ribul_P_3_epim	Ribulose-phosphate 3 epimerase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000056 all species →	Family	Ribulose-phosphate 3-epimerase-like	Interproscan
IPR011060 all species →	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR026019 all species →	Family	Ribulose-phosphate 3-epimerase	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11749 all species →	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004750 all species →	Molecular Function	D-ribulose-phosphate 3-epimerase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0009052 all species →	Biological Process	pentose-phosphate shunt, non-oxidative branch	Interproscan
GO:0016857 all species →	Molecular Function	racemase and epimerase activity, acting on carbohydrates and derivatives	Interproscan
GO:0044262 all species →	Biological Process	obsolete cellular carbohydrate metabolic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0006098 all species →	Biological Process	pentose-phosphate shunt	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01783	rpe, RPE; ribulose-phosphate 3-epimerase	EC:5.1.3.1	Carbon fixation in photosynthetic organisms	ko00710	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068748041.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

58.8Max TPM

11.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	11.95	58.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	58.84
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	29.70
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	26.75
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	26.53
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	22.95
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	21.79
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	21.70
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	20.10
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	19.13
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	17.69
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	17.53
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	16.70
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	16.59
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	14.13
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	9.46
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	8.44
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	8.10
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	7.97
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	7.86
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	7.69
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	7.65
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	7.46
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	7.01
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	6.90
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	6.17
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.09
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.65
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.43
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	1.05
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.