Gene detail

Detailed information of XP_068749773.1 in Montipora capricornis

Genomic Location: chr4:42470766...42488026
NR annotation: XP_029193389.2, LOW QUALITY PROTEIN: uncharacterized protein YMR196W-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138047010

ATGTTAAAGAAACCACTGAAGCGACGCGGAACCATTGTAATCGAACACAACTTGGAAGAAACAAAAAGGCTGGAAGAGGATTCCAAAAGAGAAAAGAATTGGAAAAGGTGGGGTCCGTATCTATCCGAAAGACAGTGGGGAACTGTGAGGGAAGATTATTCCCTCGACGGATCTTGCTGGGACTACTTTTCGCATGACCATGCAAGATCAAGAGCATACCGGTGGGGCGAAGACGGTTTACTCGGGATAACAGACCGCCAATGCCGACTTTGCTTTGGCTTGGCGCTGTGGAATGAAAAAGACCCCATTCTAAAAGAAAGGCTCTTTGGGTTGACTGGAACTGAAGGTAACCATGGTGAGGATGTGAAGGAATGCTACTATTATCTTGACTCAACTCCAACTCACTCTTATATGAAAGCACTTTACAAATACCCACAGAATGAATACCCTTATGGCTGGCTTGTTGACGAAAATCGAAGAAGATCACGAGAAGAACCTGAATTTGAACTAGAAGATACTGGTGTATTTAATGAAAGTCGTTACTGGGATATCTATGCTGAATATGCAAAGAACACTCCAAATGATATCCTTATACAGATTACCATAGCAAACCGTGGTCCCGAAACAGCACGACTCCATGTTTTACCAACACTGTGGTTCCGTAATACTTGGATATGGGGTTGCAGACATGAAGGATGTACTCGGAAGGCAAGCATGAAACAGACAGGGCCTGACACAGTAGAGTGTCGACATGAAACCTTAGGGGATTATTGTTTCTTTGTGGATGTTGGACCTGAAGATGAATTACCAGAGCTGTTGTTCACCGAGAATGAAACAAACTCTATGCGTCTTTTTGGTGTAGAAAACTACACGACCTTTACAAAAGACGGGTTTCATCGTTTCGTTATCCATGGAGAAAAAGATGCTGTGAGCCCCAAGAAGAAAGGCACAAGAGTGGCACCTTACTACTTAGTGGAAGTTCCTGCTGGTGACGAACGTGTTCTTAGGTGTCGACTTACGGCTAAAGATGAGTTAGTCATCGATCCATTTGCAGAGAGGAATTTTGGAGCCATAATGCAGAAACGACTGAAGGAAGCAAATGAATTCTATAAAGTTGCCATACCATCTGGCCTCACCCCAGAGGAAACCGATGTGTCGCGCCAGGCATATGCTGGTCTTCTATGGAGCAAGCAGTTTTATCATTACATCATACACGACTGGCTTTTTGGTGATCCGGAAACGCCATCTCCACCCAGAGAGAGACTCAATGGACGCAACTCTGAAGCTGAGTGGCGACAATTATTTAACAGAGACATTGTATCAATGCCCGACAAGTGGGAGTACCCATGGGTATGTTTGGGTCACGCTGTATTAACTGTCGGCCGTCTTTCACGAAAGGACACAGCGGCTTTTTCACTATATTATTTTGGGTATGCCACTTGGGATTTAGCTTTTCACATGCTTCCCATGAGCAAAGTAGACCCTCAGTTTGCCAAGGATCAGTTGTTGTTGTTTCTTCGAGAGTGGTACATGGCTCCTAATGGTCAGTTGCCTGCTTATGAATTCGCCTTGGGGGATGTCAATCCTCCTGTTCATGCGCTGGCGTGTTTGATGGTCTATAAAATGACAGGTCGCAAAGGTGCGCGGGATGACGAATTTCTGGCGCGATGTTTCCAGAAACTGCTCATTAATTTCACGTGGTGGGTGAACAGAAAAGACCCTTCTGGTAAAAACATTTTTGGCGGGGGATTCCTCGGACTTGATAACATCGGGATTTTCGATCGGTCCAAGGATTTGCCAATCCAGGCCAGTTTGTTGCAGGCTGACGGTACAGCATGGATGGCATTCTATTGTGTTATCATGCTCAACATTGCACTTGACCTCGCCGTCGGTGATCAGACGTACGAAGACATGGCTTCCAAGTTTTTTGAGCATTTCACTCAAATCTCAGACGCTATCAATCAAATGTCGGACGGAGTAGGCTTATGGGATGAGCAAGATGGCTTCTATTACGATCACCTCAGCTCAGACACGTGTTCCTTGCCACTACGGGTGCGGAGTATGGTTGGGCTTGTTCCCTTAATGGCCTGCCTTGTCCTGGATGATGAGTACGTGAAGAAACTTCCCGGATTTAAAAAGCGGTTGGATTGGTTTTTGTTAAACCGGAAAGACTTGGCCTCTCAGGTCTCTTACATAGAGACAGGTGGGGAGAGTCAATACCATCATCTATTGGCCATTCCCACCAAGGATCAACTTACCCGTGTATTAACCTGTGTCCTAGACGAAGAAGAATTCCTGTCCCCTTACGGGATTCGTTCCTTGTCGAAGTTTCACGAAAAGAACCCTTTTTCTTTGACGTTGAACGGGCAATGTTTTAGCGTGAAATATGTCCCCGGCGAGTCAGATACCTACATGTTTGGTGGAAACAGCAACTGGCGAGGACCCATCTGGGTTTGCATGAACTATCTTCTCATCGAAGCTCTGGAACGCTATGATTACTTCTATGGCGACACGTACGTGATAGAGTGCCCAACCAGGTCAGGGAACCTTATGCGCCTGCGCGATGTAGCCCTTGAACTGAGCAGGCGCGTGGTATCTTTGTTTGTGGCCGATGAGAAAGGAAGGAGACCTTGTCACGGAAATGACGATAGATACGCTAACGACGCACATTGGGTCGATCTGGTGTTGTTTTACGAGTACTTCGATCCTGAAACGGGACGTGGATGCGGAGCCAGTCACCAAACAGGATGGACAGCTCTTGTGAGTCGGCTGTTGGAAAAGCTCGCCAAAAGCCGCTGA

Transcript

rna-XM_068893672.1

GGAACGTTCCAAGACTACTTTTAATATTCAGATCCGGTCATTGGCAACCAAGACGAGGTGAATTCCTGGGGTTCTAAAGcaggttaaaaataaaatttgcggTCATGTTAAAGAAACCACTGAAGCGACGCGGAACCATTGTAATCGAACACAACTTGGAAGAAACAAAAAGGCTGGAAGAGGATTCCAAAAGAGAAAAGAATTGGAAAAGGTGGGGTCCGTATCTATCCGAAAGACAGTGGGGAACTGTGAGGGAAGATTATTCCCTCGACGGATCTTGCTGGGACTACTTTTCGCATGACCATGCAAGATCAAGAGCATACCGGTGGGGCGAAGACGGTTTACTCGGGATAACAGACCGCCAATGCCGACTTTGCTTTGGCTTGGCGCTGTGGAATGAAAAAGACCCCATTCTAAAAGAAAGGCTCTTTGGGTTGACTGGAACTGAAGGTAACCATGGTGAGGATGTGAAGGAATGCTACTATTATCTTGACTCAACTCCAACTCACTCTTATATGAAAGCACTTTACAAATACCCACAGAATGAATACCCTTATGGCTGGCTTGTTGACGAAAATCGAAGAAGATCACGAGAAGAACCTGAATTTGAACTAGAAGATACTGGTGTATTTAATGAAAGTCGTTACTGGGATATCTATGCTGAATATGCAAAGAACACTCCAAATGATATCCTTATACAGATTACCATAGCAAACCGTGGTCCCGAAACAGCACGACTCCATGTTTTACCAACACTGTGGTTCCGTAATACTTGGATATGGGGTTGCAGACATGAAGGATGTACTCGGAAGGCAAGCATGAAACAGACAGGGCCTGACACAGTAGAGTGTCGACATGAAACCTTAGGGGATTATTGTTTCTTTGTGGATGTTGGACCTGAAGATGAATTACCAGAGCTGTTGTTCACCGAGAATGAAACAAACTCTATGCGTCTTTTTGGTGTAGAAAACTACACGACCTTTACAAAAGACGGGTTTCATCGTTTCGTTATCCATGGAGAAAAAGATGCTGTGAGCCCCAAGAAGAAAGGCACAAGAGTGGCACCTTACTACTTAGTGGAAGTTCCTGCTGGTGACGAACGTGTTCTTAGGTGTCGACTTACGGCTAAAGATGAGTTAGTCATCGATCCATTTGCAGAGAGGAATTTTGGAGCCATAATGCAGAAACGACTGAAGGAAGCAAATGAATTCTATAAAGTTGCCATACCATCTGGCCTCACCCCAGAGGAAACCGATGTGTCGCGCCAGGCATATGCTGGTCTTCTATGGAGCAAGCAGTTTTATCATTACATCATACACGACTGGCTTTTTGGTGATCCGGAAACGCCATCTCCACCCAGAGAGAGACTCAATGGACGCAACTCTGAAGCTGAGTGGCGACAATTATTTAACAGAGACATTGTATCAATGCCCGACAAGTGGGAGTACCCATGGGTATGTTTGGGTCACGCTGTATTAACTGTCGGCCGTCTTTCACGAAAGGACACAGCGGCTTTTTCACTATATTATTTTGGGTATGCCACTTGGGATTTAGCTTTTCACATGCTTCCCATGAGCAAAGTAGACCCTCAGTTTGCCAAGgatcagttgttgttgtttcttcgAGAGTGGTACATGGCTCCTAATGGTCAGTTGCCTGCTTATGAATTCGCCTTGGGGGATGTCAATCCTCCTGTTCATGCGCTGGCGTGTTTGATGGTCTATAAAATGACAGGTCGCAAAGGTGCGCGGGATGACGAATTTCTGGCGCGATGTTTCCAGAAACTGCTCATTAATTTCACGTGGTGGGTGAACAGAAAAGACCCTTCTGGTAAAAACATTTTTGGCGGGGGATTCCTCGGACTTGATAACATCGGGATTTTCGATCGGTCCAAGGATTTGCCAATCCAGGCCAGTTTGTTGCAGGCTGACGGTACAGCATGGATGGCATTCTATTGTGTTATCATGCTCAACATTGCACTTGACCTCGCCGTCGGTGATCAGACGTACGAAGACATGGCTTCCAAGTTTTTTGAGCATTTCACTCAAATCTCAGACGCTATCAATCAAATGTCGGACGGAGTAGGCTTATGGGATGAGCAAGATGGCTTCTATTACGATCACCTCAGCTCAGACACGTGTTCCTTGCCACTACGGGTGCGGAGTATGGTTGGGCTTGTTCCCTTAATGGCCTGCCTTGTCCTGGATGATGAGTACGTGAAGAAACTTCCCGGATTTAAAAAGCGGTTGGATTGGTTTTTGTTAAACCGGAAAGACTTGGCCTCTCAGGTCTCTTACATAGAGACAGGTGGGGAGAGTCAATACCATCATCTATTGGCCATTCCCACCAAGGATCAACTTACCCGTGTATTAACCTGTGTCCTAGACGAAGAAGAATTCCTGTCCCCTTACGGGATTCGTTCCTTGTCGAAGTTTCACGAAAAGAACCCTTTTTCTTTGACGTTGAACGGGCAATGTTTTAGCGTGAAATATGTCCCCGGCGAGTCAGATACCTACATGTTTGGTGGAAACAGCAACTGGCGAGGACCCATCTGGGTTTGCATGAACTATCTTCTCATCGAAGCTCTGGAACGCTATGATTACTTCTATGGCGACACGTACGTGATAGAGTGCCCAACCAGGTCAGGGAACCTTATGCGCCTGCGCGATGTAGCCCTTGAACTGAGCAGGCGCGTGGTATCTTTGTTTGTGGCCGATGAGAAAGGAAGGAGACCTTGTCACGGAAATGACGATAGATACGCTAACGACGCACATTGGGTCGATCTGGTGTTGTTTTACGAGTACTTCGATCCTGAAACGGGACGTGGATGCGGAGCCAGTCACCAAACAGGATGGACAGCTCTTGTGAGTCGGCTGTTGGAAAAGCTCGCCAAAAGCCGCTGACATCATTAAATACATGCAGTATAAGTCGATTGAACAAACCAAAGTCTTTTCACAGTTTTTACACTGCGCATGCGTTTTTCCGACTTGACATTCTAGACAATAGTTTGCTAGCATGAGTTTcgataacaaaataaaataaatttataataGTTTCTTGTAGACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q04336	Uncharacterized protein YMR196W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YMR196W PE=1 SV=1
O14255	Probable mannosyl-oligosaccharide glucosidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC6G10.09 PE=3 SV=1
P53008	Mannosyl-oligosaccharide glucosidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CWH41 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001748 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03200 all species →	Glyco_hydro_63	Glycosyl hydrolase family 63 C-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031335 all species →	Domain	Glycosyl hydrolase family 63, C-terminal	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR004888 all species →	Family	Glycoside hydrolase family 63	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10412 all species →	MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004573 all species →	Molecular Function	Glc3Man9GlcNAc2 oligosaccharide glucosidase activity	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0009311 all species →	Biological Process	oligosaccharide metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15771	ganP, mdxF; arabinogalactan oligomer / maltooligosaccharide transport system permease protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.