Gene detail

Detailed information of XP_068749907.1 in Montipora capricornis

Genomic Location: chr4:45373188...45403628
NR annotation: CAH3136907.1, unnamed protein product [Porites lobata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068893806.1

ACTATACTTAAACTATCTGGCGCATTGCCGGCACACCTTATGCGACAGTGAATGTTTGTGTTATacagaaagtttctttttccagaAAAACATGGCATCATCACCGCGGGAGGTGGAGGAGAAAGATTTCGCTTCAGACAGAGAAAGGGCCGTAGAAGCGGTTAACGGCCACATTAAAGAAGTCTTTGACATTCTGAGTTGTGAGACTTTGAAACTTCGCAAGGAAATGGAGGCTTTCGATGCCGTGGCAAAGAAGCTTAAACACGTCAATTTCCCCAAAACACTGAAACTCAATGTTGGCGGACAAATATTTTCAACTAGTCCGGAAACTATGAGGAAGGATTCAgGTTCAATGTTTAGCGCTATGTTCTCTGGAAGATTCGATACAAAGCCCGCTGAAGATGGAACTTACTTCATTGATCGCGATGGAACCCACTTCCGGTACATCCTGAATTACTTGCGAACGGGGAATCTTGTTGTTCCAGAAGACAAGATCATTCGTAGAGAATTGCTCACAGAAGCCGAGTTCTATCAAGTTCAAGGAATCATTGAGGAACTTAAAGCCAACCCCTTCAACGATTCTTCCATCTTATCCATGGAGCAGCGCCAAGTATTGACGGATTGGCTCAAAGGCTCCCTCACAAGTGCTGGCCAAAATTATGCGCTGATATATCGAGCTTCTCGCGATGGCTGGGGTGCTACCCACTTTCACTCTCGCTGCGACCGCAAAGGACCTACTGTAACAGTGGTGAGGAGTGGAAATTATATATTTGGAGGCTACACAGAGCAAAACTGGGAAGcAGCAGCCTCTGGTATTTACAAAAGAGATCCTAATTCCTTCCTGTTCAGTTTGGTTAACCCAAGTGGATTGAAGCCCGCAAAGCTGCCTCTGATTCCAGGAAAAGAGGGCTCAGCAATTTACTGTAGTACCAGCTATGGTCCTGTTTTTGGCAGCAACACACCTAACTCGTATTTCGACCTTTCCATCGGCAACAATTCGAATCAGTCGAATACTAATTATGCGAGCCCAAACAATTGTTATAAGTGCCCTGAAGGCCAAAACGCAAACAACTTTTTGGTTGGAAATTACCAATTTGCTGCAAGTGAGATAGAAGTATTCGTATTTGAAAAGTGATGAAATTAGTGTGGCCTAGTTTCTAAAACTGTGCCCAGTTCTTCAAAGCCGGATttagctaatcctggattagcaCGGAAAATCAGGccgatttttttcagtttatttaccaatatgaaaattgtttccgCACGATCTTGAGTTAGACTGTTTTCTTGTCCTTAATTAATAacggtaataggactgagtggagtccaattcggtctgtaatcatacgagtgattaacaaaatcggacgaccgcgcaGCGGGAGTCcaatttgtttaatcacgagtatgattacagacccaATTGGATGATACGACTgccaactgtccgattacaaccctacacaataattattgaaatataaagcagttaatgcaccaatcaaagtTGAGAAAATTGCAGTGGTTATGATTAAGCATAAAATTAGattgttaaaggctttttttttggcGAGCAAATTCCAAACCTTGGTTTGATATTTAATCATGGACTAGTGTTAATTAGTTTTGATCAACTGgtctgggttgctcgaagcgtgGATAgcactaaccagcgttaaataccatcgaaacctgtaggttttgacacctcttaaccaacggctagcgctaaccaggcttggAGCAACCGGCACCAGGACGCTAGAGTTTAAATTAACACGAAAGTCCCTGATGGGTAAACACATATCTCATTTGCCAGCTGATAAGCTATTTTGTAAAGCCAAAATTTACCATGTCAAATTAAGTTCAATGAAGCTCAAGTAAAACATTTCTGTGTATCACCGCATTCAACTGAACATTTTGCCTCTTCCCTATGTACCGAGAGGTTTAGGACTTAGTATTTCCTGATAAGGCCATCTATATACGGCTAAGTTAAATAATTGATATTAGTTTTGTTAAGATTGTAAATGATGGTGTTAAACGATGAAAATTGTAGCTATGGTTGTTTGATTAAGTTGCTTTGCCTTGCCGGATAACGACGATTATAGATAAAATCATTTAAGCAAATTGCTTCGCCTCATAAGTGGCGGTACTTTTATTGTTAAGGTCTTTTGAATGGGTTAGTGTTTTCATACTAAATTAAGGGATATTAAAAAAGGTTATTGGTTTCACTTTTTTTGGCAGTTTCCAAGCAACATTGCTAATTGACCCTTATGAGAAACGTGCTCCTAAGGCTCTGTTTGCTCTTTGGTAGTTGCGATCAGAATGTGTCTTCTCCTAAGGTCATGAATTTAGTTTGGAACTGCTGTTCTAGAAAGGTATTTGGTACGCTAGGCCAACTACGTTTTTTTATAAGGAATATTCAAATTGGTTTTTGGTACCACTAACGGTTATTTGTGTAAtttgtccaaggacaaataagGACAAGATATATTTCTGGAAGCAACTTATTTTCTGTTCTCGTCTTACCAGTTTTGACTTGTTCTCGAGGTTCCAGATCGGATTCATAATAACAGCAGTCTCTTTTGAGTTtcaataagtgtttttaatctaatattttaaagtaattaaaaatagCACCTGTAATCGTAATTATTGTTGAGTTCCGTTCTTCCTGGAACACGTATGCCAGATAAATTATGGAAAAGGCACCGCTTATGCTcgtcctttcctttttttgtctattgttttgaCTCTGTTATGCAACAATCATAAATCGTCATTTTTGGTTACTGTGTAACTTGATTCTAGATATTGTAACTggtttcttgtaatttttgtaacttttcaTACACCGATCGTGCTAATCTAATGTTGACAAACGTGTAAAATACTGTCGACACAAacgattttctttgttgtgaAAAAATATGTTAATGCCCTGACGCGCAGGCGTAGTGCGTCCGGCAAgcgtcattttgacgtgtgaTTGGTACTTTATTGATCAGTCAGACCACGAACAAAAAAAGGGTGCTGTATGGCTCACAAAATAGAGTTAAGAGTGAGAACTAGTTGAACGAGAGTTGTAACATCGACCCGAGAATGCCAAATAAAGAAGTGAAACAGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4G0X4	BTB/POZ domain-containing protein KCTD21 OS=Homo sapiens OX=9606 GN=KCTD21 PE=1 SV=1
Q3URF8	BTB/POZ domain-containing protein KCTD21 OS=Mus musculus OX=10090 GN=Kctd21 PE=1 SV=1
Q6DG99	BTB/POZ domain-containing protein KCTD6 OS=Danio rerio OX=7955 GN=kctd6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000300 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07534 all species →	TLD	TLD	Domain	Interproscan
PF02214 all species →	BTB_2	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR045068 all species →	Family	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1/2/3	Interproscan
IPR006571 all species →	Domain	TLDc domain	Interproscan
IPR003131 all species →	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11145 all species →	BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0051260 all species →	Biological Process	protein homooligomerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068749907.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068749907.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

20.5Max TPM

10.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	10.04	20.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	20.55
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	17.47
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	16.77
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	15.40
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	15.28
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	14.88
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	14.81
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	14.39
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	14.27
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	13.75
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	13.69
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	13.49
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	13.20
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	13.02
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	12.97
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	12.86
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	11.98
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	11.94
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	11.84
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	11.83
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	11.33
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	10.84
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	10.31
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	9.68
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	9.26
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	7.40
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	6.72
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	6.22
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.25
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.