Gene detail

Detailed information of XP_068749963.1 in Montipora capricornis

Genomic Location: chr4:46288870...46323107
NR annotation: XP_029194850.2, LOW QUALITY PROTEIN: ATPase MORC2A-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138047134

ATGTCAAGCGCATCAAGTTATTCCACTCTTCGTAGAGCACAGCTAACTTACGAATATTTGCACACGAATAGCACAACACATGAATTTTTATTTGGAGCCCTCGCAGAGCTGGTGGATAATGCACGAGATGCGTCATCGCAGAAGATTGACATCTATACAGAACCGTCCGAGTCCTGCAGGGGGAAGTTTTTGTTATGTTTCCGCGATGATGGAGATGGTATGGATCCATCGGAAGTTGCAAATGTAGTACAGTTTGGAAGATCAGTTAAACGTACGGTTGACTCGAGACTGATTGGACAGTATGGCAATGGGCTGAAATCTGGGACGATGAGGATAGGAAAAGATATGATTTTGTTTACGAAAAAGGGCAACACCATGAGCTGTTTGTTTCTTTCAAGGACGTTCCATGAACGTGAAAAAATAGAAGAAGTTGTTGTACCGATGCCATCTTGGGAATTGTCTTCTAAAAAGTCAACTGCAAAAACAAAGCGTGAACTGGAGAAACACCAAGTCGAAGTAAACCTCATTCTCAAGTATTCGCCATTTAGCACGGAATCACAACTGTTCGAACAATTTGACAAAATTGGACCAAAAGGAACTCTTGTCATCGTCTATAACTTGAAGCTCTTGGACAACGGAGAGCCAGAGCTTGATGTTGTCAGTGATCCATACGATATCAAAATGGCAGATCCGTACCCTGGAGAGAACGTGGCAGACTACGACATGATCATGCCTGAAAGAGCATCCTTTAGGGCGTACACCGCCATTTTGTACTTGGACCCACGAATGAAGATTTACATCCAGAACAAGAAGGTTCGAACGAAGAGACTGACGACTTGTCTTTACAAACCCAGGTGTTACCATTTCACGTCCAAACGGTTCAAGACAAGATCCGAGGAGGAGTCCAAAAAAGCAGACCAGGAAGCTAAAATAGCCGAAGAAAAGGCATGGGAGCTGGAAACGCAGGCTAGAGAAACTCAAGCGCAAGCAGACCAGACTTCGAAAGATGGAAGGGCAAAACTAAGGAGATCACAAGCTCTTGCAGCTGAAGCGCGGGCCGACGCTGAAATGAAAACGAAAATAGCGGATGCTAAGAAAAACTCCATGAAGGAACCCAAGACACTTAACTTCACTTTTGGATTCAACATTGAAAATCGTCGGTGCTATGGAATGTTTATTTACAACTGCAGTCGGTTGATAAGAATGTACGAACGAGCTGGACCACAACAAGACGGCGGAGTAAAATGTTATGGAGTCATGGGTGTGGTGGATGTTCCTTATTTAGTTCTTGAACCAACTCACAATAAGCAAGATTTCGCTGACGGAAAGGAATTTAAGCATTTAAGCCGAGCGTTGGGCGAACACTTGGAACAGTACTGGAAAGACTCGCAGATTGAATCACAAGGCGCAACGAGTTTTTGGGAAAGTTTTGGCTATATAAGCAGCAAGTGGGCGGATGGTCCCTCAAAAGAAGTGAGGTTCGTTAGAAAGAGAGCCATGCAGATAGATCTCAATGTGCAGTGTGATATTTGCCTGAAATGGCGGACGCTACCATTCTCGCAAAGAAACGTTGGCAAGGACTTGCCCAATGAGTGGTGCTGTGCTATGAATCCGGATCCTACTTGCAACAGTTGTAGTATGCCCGAAGTGAAGGTAGCAATACCAGTCGGTGTTTTACAAAAACAAGTTAAAACAGCAGAGGAGAAAGAGAAAGACCTACAGGAAGAAATGAGGAAAATCAGAAAAAAGCAACAAGCCCTTGGTCAGACGACGCAGCGACAGCAGACGCCATCACAAACCGTTTCCGAACGGAGCAGAATTCAACCACAGGCTGTGGTGCACAAAAAGGCTGGATCGACTTCTTCTGGTCAGACTTCCTCCAAGTCTAAGAGCGACTCCTCCGAGGTAGACAAGCTCAAGCACAGCACACGAGAATGCAACGGAGTGCAGCCGCAGGCCACTTTGAACAAAAAAGCAGAGCGGTCATCTTTGGCCCAGAATAACTCCAAGAGTAACTCCTCGGAGCGCCAAAGGATCGAAAAAACCACACCGGAAAGGAATACAAAAAAATCACCGGCCACTGTCTCCAAAAAGGCAGAGAGAACGTCTTCAGCACAGAGTTCTATCTCCAGTGAGAGAAACACCTCTGGCACTGAGGCGTTAAAACGACGAAATGCCGAACCTCAACCTTGTGATGAGGAAGTGCAAGCCAAGCGGAAAAAGGCAGATGCCACAGTAGTGAAAGTAAAGCGTGTGGAGAGGGTAGAGCCAAGCCGTACAGAAACAGAACAACAAAGACAAGAAGCCCCGAAACGAAAAGATCAAGAACAAGTAATGGAGTGGGGTAGTGAGGCTGAAAGCGATAGAGTAATGCTCCCAGAGGGAACCAAAGTGGAAGCAAGGGTTGATGGTTCGAAGTGGTACTCGGGGATAGTATTTGCTGCCAAACCAAAGGATTCGTTGTGTAGGGTTCGCGTCAAATTTGATTTGTACCCCAAGGACAAGTATGACAAGTGGTTTGACCACCCAAGCGATGTCTTGAGGGTGTTGCAACCTGTAGAGTCAGCAGCGCCTAAGTCACCAAGCCCCAGCCGTGAGCTTCCCACAACAACGACATTTGAAATACCCAATGATCGATTAAAACTAGCAAAGCAGAAAAAGCCTGTACCAACAACTGTACACTCGCCAGATGACAACAGAGTGTCTTCCATGTCAGATGCAACCAACTTGGAGGAAGGACCATCACTTCAGCAATTCGTTGGAATGCTGAGACGTTGCCTGTCTTTTTTTGCCCCGCCTGATTTTCGAATAACTAAGGAATCCATAAAAGAGATGGACTTGGACGAGTTAAAAGATTTCCCGCTGGAACAATTTTTCGACAGCTACGAAAAATACCTATCAAAGTTGGTTGGAAATTTCCGAACCGAAAGAGATGAAGCCATAAAGAAAGCTGCCACAGCCGAAGATCGTTTAAAGCAAGGGACAAATGCGCAAGGGAAGCTGTTAAATTTAAGGAGGAATGCAGCCAAACTACTTCGTTACATTCAGGAGGATCCCGAGGAGTTGGCAATTAGTGCAGACGATGTATCCGACAAGGTGGACGAGATGATCAAAACGATTGCCGAACAGGCAGAAAGTCGGTTATAG

Transcript

rna-XM_068893862.1

TTTACTTTGCGTTGCTAACCAACTCGTGTGGAATAAGAGCGAATCTGGGCCACAGTTAGTAAGCGTAGACTTAGTTATAAAGGAcgaaattgtttttaattttagcgaGGTAAAGAATCTTTGCATGGGACCCATTGTGGGAGCGAAATAAGACAGTTACTCAGTTTTTGCTGACGAGAGCTCCTTAGCACAAGCGAAGAAATGTCAAGCGCATCAAGTTATTCCACTCTTCGTAGAGCACAGCTAACTTACGAATATTTGCACACGAATAGCACAACACATGAATTTTTATTTGGAGCCCTCGCAGAGCTGGTGGATAATGCACGAGATGCGTCATCGCAGAAGATTGACATCTATACAGAACCGTCCGAGTCCTGCAGGGGgaagtttttgttatgtttCCGCGATGATGGAGATGGTATGGATCCATCGGAAGTTGCAAATGTAGTACAGTTTGGAAGATCAGTTAAACGTACGGTTGACTCGAGACTGATTGGACAGTATGGCAATGGGCTGAAATCTGGGACGATGAGGATAGGAAAAGATATGATTTTGTTTACGAAAAAGGGCAACACCATGAGCTGTTTGTTTCTTTCAAGGACGTTCCATGAACGTGAAAAAATAGAAGAAGTTGTTGTACCGATGCCATCTTGGGAATTGTCTTCTAAAAAGTCAACTGCAAAAACAAAGCGTGAACTGGAGAAACACCAAGTCGAAGTAAACCTCATTCTCAAGTATTCGCCATTTAGCACGGAATCACAACTGTTCGAACAATTTGACAAAATTGGACCAAAAGGAACTCTTGTCATCGTCTATAACTTGAAGCTCTTGGACAACGGAGAGCCAGAGCTTGATGTTGTCAGTGATCCATACGATATCAAAATGGCAGATCCGTACCCTGGAGAGAACGTGGCAGACTACGACATGATCATGCCTGAAAGAGCATCCTTTAGGGCGTACACCGCCATTTTGTACTTGGACCCACGAATGAAGATTTACATCCAGAACAAGAAGGTTCGAACGAAGAGACTGACGACTTGTCTTTACAAACCCAGGTGTTACCATTTCACGTCCAAACGGTTCAAGACAAGATCCGAGGAGGAGTCCAAAAAAGCAGACCAGGAAGCTAAAATAGCCGAAGAAAAGGCATGGGAGCTGGAAACGCAGGCtagAGAAACTCAAGCGCAAGCAGACCAGACTTCGAAAGATGGAAGGGCAAAACTAAGGAGATCACAAGCTCTTGCAGCTGAAGCGCGGGCCGACGCTGAAATGAAAACGAAAATAGCGGATGCTAAGAAAAACTCCATGAAGGAACCCAAGACACTTAACTTCACTTTTGGATTCAACATTGAAAATCGTCGGTGCTATGGAATGTTTATTTACAACTGCAGTCGGTTGATAAGAATGTACGAACGAGCTGGACCACAACAAGACGGCGGAGTAAAATGTTATGGAGTCATGGGTGTGGTGGATGTTCCTTATTTAGTTCTTGAACCAACTCACAATAAGCAAGATTTCGCTGACGGAAAGGAATTTAAGCATTTAAGCCGAGCGTTGGGCGAACACTTGGAACAGTACTGGAAAGACTCGCAGATTGAATCACAAGGCGCAACGAGTTTTTGGGAAAGTTTTGGCTATATAAGCAGCAAGTGGGCGGATGGTCCCTCAAAAGAAGTGAGGTTCGTTAGAAAGAGAGCCATGCAGATAGATCTCAATGTGCAGTGTGATATTTGCCTGAAATGGCGGACGCTACCATTCTCGCAAAGAAACGTTGGCAAGGACTTGCCCAATGAGTGGTGCTGTGCTATGAATCCGGATCCTACTTGCAACAGTTGTAGTATGCCCGAAGTGAAGGTAGCAATACCAGTCGGTGTTttacaaaaacaagttaaaacaGCAGAGGAGAAAGAGAAAGACCTACAGGAAGAAATGAGGAAAATCAGAAAAAAGCAACAAGCCCTTGGTCAGACGACGCAGCGACAGCAGACGCCATCACAAACCGTTTCCGAACGGAGCAGAATTCAACCACAGGCTGTGGTGCACAAAAAGGCTGGATCGACTTCTTCTGGTCAGACTTCCTCCAAGTCTAAGAGCGACTCCTCCGAGGTAGACAAGCTCAAGCACAGCACACGAGAATGCAACGGAGTGCAGCCGCAGGCCACTTTGAACAAAAAAGCAGAGCGGTCATCTTTGGCCCAGAATAACTCCAAGAGTAACTCCTCGGAGCGCCAAAGGATCGAAAAAACCACACCGGAAAGGAATACAAAAAAATCACCGGCCACTGTCTCCAAAAAGGCAGAGAGAACGTCTTCAGCACAGAGTTCTATCTCCAGTGAGAGAAACACCTCTGGCACTGAGGCGTTAAAACGACGAAATGCCGAACCTCAACCTTGTGATGAGGAAGTGCAAGCCAAGCGGAAAAAGGCAGATGCCACAGTAGTGAAAGTAAAGCGTGTGGAGAGGGTAGAGCCAAGCCGTACAGAAACAGAACAACAAAGACAAGAAGCCCCGAAACGAAAAGATCAAGAACAAGTAATGGAGTGGGGTAGTGAGGCTGAAAGCGATAGAGTAATGCTCCCAGAGGGAACCAAAGTGGAAGCAAGGGTTGATGGTTCGAAGTGGTACTCGGGGATAGTATTTGCTGCCAAACCAAAGGATTCGTTGTGTAGGGTTCGCGTCAAATTTGATTTGTACCCCAAGGACAAGTATGACAAGTGGTTTGACCACCCAAGCGATGTCTTGAGGGTGTTGCAACCTGTAGAGTCAGCAGCGCCTAAGTCACCAAGCCCCAGCCGTGAGCTTCCCACAACAACGACATTTGAAATACCCAATGATCGATTAAAACTAGCAAAGCAGAAAAAGCCTGTACCAACAACTGTACACTCGCCAGATGACAACAGAGTGTCTTCCATGTCAGATGCAACCAACTTGGAGGAAGGACCATCACTTCAGCAATTCGTTGGAATGCTGAGACGTTGCCTGTCTTTTTTTGCCCCGCCTGATTTTCGAATAACTAAGGAATCCATAAAAGAGATGGACTTGGACGAGTTAAAAGATTTCCCGCTGGAACAATTTTTCGACAGCTACGAAAAATACCTATCAAAGTTGGTTGGAAATTTCCGAACCGAAAGAGATGAAGCCATAAAGAAAGCTGCCACAGCCGAAGATCGTTTAAAGCAAGGGACAAATGCGCAAGGGAAGCTGTTAAATTTAAGGAGGAATGCAGCCAAACTACTTCGTTACATTCAGGAGGATCCCGAGGAGTTGGCAATTAGTGCAGACGATGTATCCGACAAGGTGGACGAGATGATCAAAACGATTGCCGAACAGGCAGAAAGTCGGTTATAGCAGAGGACAACAGTTACATTTTAGCAAATCTATTTATGAATCTATTTTTCTTACGACAACTCAAAAGCCTGCTACGCATTGTAAAGCTGTTTTATACGAATGTGATCGCGCTAAGCGTGAAGTGACAACTTTGTATTGCGAAATATATTACTTTTATAATTAGGCTATTTAAGACTGCAAAATAACTACATTTGAAGAATGAGAATGGTAAAGGACAAAAAAATGGCTGTGCCATTGAGATAACACGCAGTGGTAGGTATCTTAACTGCAAAGCACCCTTGTTACGCTGTTGAAAGAGAATATTTTCTATTGCACAGAAAGGACCCGTTGTGTTCAATACTTTAATACCAATAACTGGGAGCTTTTTAATTCTTAccagaaattaaaaaagctcaATTTCTCCACGGGATAACAATTACCGGTGGAAATTAAATAACCAATACATATTCCAACCTCAAGCTTCATCAGAATTTGTACGTACTTAAGCCAGTCGTGTATGTAAACTGTATCGCTTTGATTAATTAAAGAAATGTCACCttttgttacaaaataaacaaatccTATCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q69ZX6	ATPase MORC2A OS=Mus musculus OX=10090 GN=Morc2a PE=1 SV=2
Q9Y6X9	ATPase MORC2 OS=Homo sapiens OX=9606 GN=MORC2 PE=1 SV=2
Q8C5W4	ATPase MORC2B OS=Mus musculus OX=10090 GN=Morc2b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004737 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17942 all species →	Morc6_S5	Morc6 ribosomal protein S5 domain 2-like	Family	Interproscan
PF13589 all species →	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF07496 all species →	zf-CW	CW-type Zinc Finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041006 all species →	Domain	Morc, S5 domain 2-like	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR011124 all species →	Domain	Zinc finger, CW-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23337 all species →	ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24135	MORC; MORC family CW-type zinc finger protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068749963.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

60.9Max TPM

18.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	17.97	60.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	60.94
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	51.77
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	51.49
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	34.23
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	31.31
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	30.57
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	29.74
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	29.09
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	28.41
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	24.18
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	21.67
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	21.09
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	19.91
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	19.10
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	18.72
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	17.89
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	16.85
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	15.95
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	13.76
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	13.30
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	13.19
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	13.03
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	12.86
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	12.77
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	12.62
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	12.17
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	10.32
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	9.92
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.