Gene detail

Detailed information of XP_068749980.1 in Montipora capricornis

Genomic Location: chr4:46656934...46660296
NR annotation: XP_020613739.1, uncharacterized protein LOC110051965 [Orbicella faveolata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068893879.1

CATAAAAAGCGGAGCCAGTCATAGCTGAATCCATCATTGGCGAATCAGCCTCACAACTCGACTGTCCGATCAAACTCAAGGAACATTTTACATTGGCAAGCCATACTCCCAAACATGAGTCTTAGTAAGTTAAACAAATTTCTGAGAATTAGCGTCCGAAATTATGGATCCACCGCTATTCGACGAGATTATGGTCCTGAGGCCGTGGAAAAACTCCGTGGTTCCTTGAAAATTGAACACACTCTTGCAAGACGAGGGGCAGGGAGGCTCTGGGATCTAATCAATCGAGGAGAAGATTCTTATGTTAACGCACTCGGTGCTATGACAGGTGGCCAAGCCGTTCAGATGGCTAAAGCAGGTCTAGAATCCATTTATCTAAGTGGATGGCAAGTGGCTGCGGATAGTAACATGGCAGGACAAACATTCCCTGACCAGAGCTTGTATCCTGCTAACTCTGCTGCGAAGCTTGTCGAGAGAATCAACAACGCCTTTATTCGAGCGGATGAAATCGCGCACATGGAAGGATCGGACAGACACATCGATTTCTTCTTGCCAATCGTCGCAGATTGTGAGGCAGGCTTTGGTGGACCACTGAACGCCTTTGAACTTACAAAAGCCATGATTTCAGCTGGTGCTGCTGCGGTCCACTTTGAGGACCAACTGGCGTCAGAGAAGAAATGCGGTCACATGGGAGGAAAAGTGCTTGTACCAACCCAGCAGTTTATTAAGGTCCTCAATGCTGCTCGCTTTGCTGCTGACGTTATGGATGTACCAACTGTTATCATTGGACGAACAGACGCTGAATCGGCGGCTCTATTGACGTCAGATATTGATCCACGTGACCAGCCTTTCCTGACAGGTGAACGAACTCCCGAAGGATTCTATCGTTCTACTGCCGGCCTACAACAAGCGATTGCTCGTGGACTCAGCTACGCTCCATATTGTGACATCCTATGGTGCGAGACAGGGACACCTGACTTGGACGAAGCACACATGTTTGCTGAAGGTATCCATGCAGCGTTTCCAGGAAAACCGCTGGCCTACAACTGTTCTCCTTCCTTCAACTGGAGAGCCAATCTCAGCGACAAAGAAATAGCGACCTTTCAGAAGGAACTCGGTAAAATGGGCTACAGATATCAGTTCATTACTTTAGCCGGCTTCCACTCTCTAAACCACGCCATATTCAAGCTTGCACGTGACTACAAAGAGAATGGCATGTCTGCTTATACCAAGATACAAGAAGACGAGTTTGCGCAGGCGCAATTCGGATTCACTGCACACAAGCACCAGAGGGAAGTGGGAACTGGGTACTTTGACCAAGTTAGCATGGCGATCGGCGGTGGAGCGAGCTCTACAACAGCCTTAGAAGGATCAACAGAGGAAGAACAGTTTACTGACAAAAGCTTACCAAATGTAAACAGAGCATCAAATCAGTGACTACAATAGCTTCGTATTTGAGCTGCTTCAATTTAATCTTTCTGGACGTCACTACGTTTGGCTCTTGTCAAAAGACAATTGGCATACAGATTTATTGTGATGAAATAATGTATATAAAGCGCATCCCTAAATTAtcgttatttattttgtttataaaATTAAGTTTAATGTAAATTGATTTTGTACATTGTAGCAAAGGAGAACGACATTTTCAAGATCAATTCAAATCAAGCGCCATTGATTGccttttttaaattattcacgACAACTGACGTTTTAATTCAGTACTGGAGTGACTAAGAAAAAAATTTTTGACTTATTGTCAGTTTGAGAGAGAAGGTCTGTATGTGCAGTTTCGAAGCAATTTAAGTTtaatttcagtaaaaaaatcaaCTCGATATAACTAGGGGCTAACTCAAAAACCTACCGGTTTATTTAGTTCCTAGGCTCAAACAGttgtaattatgattattttatctatttatcTGTTTGTTTCCACTTTTAAGTTGTACATTAACTATCaactgagcaaataaaaattttattctATTCTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9K9H0	Isocitrate lyase OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=aceA PE=3 SV=1
P51066	Isocitrate lyase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=aceA PE=3 SV=2
P0A9G7	Isocitrate lyase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=aceA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002788 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00463 all species →	ICL	Isocitrate lyase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006254 all species →	Family	Isocitrate lyase	Interproscan
IPR018523 all species →	Conserved_site	Isocitrate lyase/phosphorylmutase, conserved site	Interproscan
IPR015813 all species →	Homologous_superfamily	Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily	Interproscan
IPR040442 all species →	Homologous_superfamily	Pyruvate kinase-like domain superfamily	Interproscan
IPR039556 all species →	Domain	ICL/PEPM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21631 all species →	ISOCITRATE LYASE/MALATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004451 all species →	Molecular Function	isocitrate lyase activity	Interproscan
GO:0019752 all species →	Biological Process	carboxylic acid metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01637	E4.1.3.1, aceA; isocitrate lyase	EC:4.1.3.1	Glyoxylate and dicarboxylate metabolism	ko00630	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068749980.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

26TPM > 0

1Conditions

405.1Max TPM

69.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	26	69.19	405.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	405.07
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	382.86
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	378.91
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	212.89
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	208.02
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	205.03
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	125.86
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	122.40
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	119.54
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	51.97
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	48.26
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	47.28
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	45.68
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	45.20
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	41.48
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	12.35
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	12.08
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	10.54
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	3.83
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	3.39
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	2.44
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	2.41
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	1.07
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.94
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.89
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.50
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.