Gene detail

Detailed information of XP_068750077.1 in Montipora capricornis

Genomic Location: chr4:48420460...48425065
NR annotation: XP_015767281.1, PREDICTED: inositol monophosphatase 3-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068893976.1

GACACAACTTTCGACATGTCACAGATGCCTTCTGCGGCCAATGCTGTAAACATGGGAGCTGCGAAAATAACACTGTCTCCCATCGGAATTGTTGTCATCGGTCTTGTAGTTGTCGCATTTGTCTTCTACTTGTCCACTGACGGAGGTGCCAGCGAATTTTCAAATGGTTATTCTGCTGGAGAAGACACAATCTCGATGAAACATCTCATTCAAACAGGAATATATCTTGCCGAAAAAGGAGGAGAGGTTGTCCGGAAAATCCGCCGTGGTGAAGATATTGGGgAAGGAAGTAAAGGGAAAACACGTGAAGGAGCGAACAACCCTGTGACACTAGGAGACATGCTTTCGCACGAGACCATGTATTATGGCTTCAAAAAGGCATTCCCTAACTTGAATGTGGTGTCAGAGGAACATGACCATGGAGAAATTGACATTAATGAGGTGGAGAAACCTAATACACGAGACATCGATATTGACAGTAGCCTCCAATTTAATAAAGGAAATGAAATGGTTTCATCAGGGAATCTCTTAGTTTGGATTGATCCTCTTGATGCCACACAAGAATACACAGAAAACTTAGTTAAATATGTGACCACCATGGTTTGTATTTCCATCAAAGGAAAGCCAGTGGCAGGGATTATTCACAAGCCATTTCTTGGGGAAACATATTGGGCTTGGGTGGGTCATGGATCATCTCAGAACATTAAGGTTCCtgaaaaaagagagactgctttAAAGGAACCAAGAATCATAGTTTCAAGGTCACATGCTGGCAAAGTAAATGCCACTGTGAGAGAAGCATTTGGTCCAAAATCAAAAGTGATACCAGCAGGTGGTGCAGGTTTCAAGGTGTTGTCGCTATTTCAAGGCGAAGCTGATGCTTATGTCCATGTGACTTTGATAAAGAAGTGGGACATCTGTGCTGGGGATGCCATATTAAGAACATTAGGTGGAAAAATGACAACTTTAGATGACAAAGAAATAGAATACGGTGACGAGGAGAAACCGCGTAACGAGGGAGGACTTCTTGCTGCCATACATGACCATAAGGAGTTTCAAGACGAAGTAGCACAAAAGCTGAAATCATAGAAACCGATGACAAAACTGTGCAGTTGAATTTATCaaaagggaccttaagatcggAGGACAAGGACGACTAGGATggcgagttttccgttctgagcaaaTGCatttcgaaaaatgtcggcctccaaaccttatgcgcaatTTCTCAGTATGACAAAACTTGTTCTTGTAGTTGTCCTTGTTCTCCGATTTAAAGGTCCCTACTGTTTCAGACAAGAGATCGGTATCAACCTTGagttaaagaaaacaacaagaGGTGGTCATCTGATGAgacaaaattaagaaattgaaGGGCTCATTGTGTCATCAGATTACTGCCCTTTTTCAAGGTCTAGCTGGCACCTCTCAACTGACAAAATGTTGAGAGTCAGTCTTACACACAAAAAATGAAGGATGGAATGGaacctttttttctctttttgtttgttctATTTGACCTCACTTTTTGTATACCATGTATGGTCTGGTCATGATTAATGTAGGAAATTGCATTTATCTCTAGTATAACGCAGCAGGAGTAAATTTATACAAATTGGATAAGCCGTAACGCTTTTCTTCCTAAAATTGCCACTTGTTTATTTGACTCtttctaacaccagacaattatACTTGTCACTAGGAGCCCTTTAGGAAAGTGTTACGATCTATCATAGCCCTTTATCAAAGCATTAATGTTAAAGAGACATACCagtagtttttgagtggacgtGAATGTTGTTTTGGGTAGGGTCGTACTTCCTAtggttttctgtgctaaatccattatctttgttcattttattgctcttttggccaatcctgaaccACCCCATTGATGAATACAATCGTCTGGCATTGGACAGAGTAGAATCTATCAATTCTCAGTCCCTTGGAGTCATTTGGTTAAGGATTTGAAATTGTACAGTTTGGGTGTTTTTCAGGTACCAGTATTTATTTCACATTTTATTAACACGAATATCTTTCAAGTCTACAACATCCAAAAACAGCCAGCTGGTACGATGGCAAAAGCACCTATAAAATACCAGTAAAGGCTTTTGTGTTGCATAAGCTTATGACTTCCATGGGATCAAATTGATgaaaattttacatttttatccAGGAGTGGTTGTTGTGTCAAGTTTTAGAACTTTTTACCCTCTTGCGTGGAAGTACATATGATAATCCAAATTTAAGTAGAGTTAAACTTTATTTCCTATGGTATTTAAAAGTTCTTTATGGGGGTTTTAAGGCTTAGAATAGTTTTATAATTTGGTACAAGTTGGGACTCGAAGATTATATTAGATATGTGAAATAATTCAACATACGCATACATGTATACTTTGTCAGACCAGGAAAAAGTTGAAgtaaaaatttataaaatagGGATCTCGCTAGACATTTGTATAGAGAAGTTTTGGAGACCACTTTTCAAAGTAGACACTTTCAAAGGAGTAAAGaagactattgttttcttgttttttgtttttgtttttttttttgacaatgaCATTATGGAAGAGATGTTTTCCCCATGGTGACTCAAGATACTTGGAAAAATCCACGTTCTCCTGTATTATAATAGTTGAATGTTACCTTAACACTATCATCTGCTTCACTTCAATGATAAGATTATTACTGTCAACATTATATTTGCATTATTGTCTGGTTCCAGTAATTATTCAATATTGCCCTTCAAGTTTTAAAGGATCAGGAGTCAGTGATTGTCATGGCTTCAAAAGAAAATagactttttaatggttttgatAAGTTACATGATTTTACAGTAATTCTATGCTGTGACCATGTTGGAATAAATACtttagaaataa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2YDR3	Inositol monophosphatase 3 OS=Danio rerio OX=7955 GN=bpnt2 PE=2 SV=1
Q6NTW5	Inositol monophosphatase 3 OS=Xenopus laevis OX=8355 GN=bpnt2 PE=2 SV=1
Q28CL4	Inositol monophosphatase 3 OS=Xenopus tropicalis OX=8364 GN=bpnt2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008030 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00459 all species →	Inositol_P	Inositol monophosphatase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020550 all species →	Conserved_site	Inositol monophosphatase, conserved site	Interproscan
IPR000760 all species →	Family	Inositol monophosphatase-like	Interproscan
IPR050725 all species →	Family	CysQ/Inositol Monophosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43028 all species →	3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan
GO:0008254 all species →	Molecular Function	3'-nucleotidase activity	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15759	IMPAD1, IMPA3; Golgi-resident PAP phosphatase	EC:3.1.3.7	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068750077.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

31TPM > 0

1Conditions

141.7Max TPM

27.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	31	27.77	141.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	141.73
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	49.95
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	47.52
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	45.94
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	41.27
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	41.22
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	35.46
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	33.84
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	33.52
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	33.00
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	32.75
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	31.37
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	30.49
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	30.45
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	30.22
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	28.54
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	25.88
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	25.47
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	24.80
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	22.87
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	22.21
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	22.19
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	22.16
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	20.14
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	20.06
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	19.86
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	18.98
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	18.48
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	18.18
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	16.94
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	14.25
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.