Gene detail

Detailed information of XP_068751618.1 in Montipora capricornis

Genomic Location: chr5:7124285...7144778
NR annotation: XP_044183332.1, LOW QUALITY PROTEIN: kelch domain-containing protein 3-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068895517.1

GGCTGCAAATTCGTATTGCACCTACATGTAGCAAAGCAAATTTATTGCAGTAGCGGCTTTTAAATTTTTACCAGGACCCATTTTAGCATTATAGTTTTCAATGAGAATTGTTTTACATTAGAGTCATTAAGTTATGGCAACCAGATGGACACAAGAAATTGACGGAGGCCCCCGAAGAGTGAATCACGCCGCAGTTTCTGTTCGAAATCGTTACATTTTTAGTTTTGGAGGATACTGTACAGGTGAAGAATACAATAGAATCGTCAAGATAGATGTGCATGTCTTTGATACAGTGCCATGTCGATGGATGAAACTCAATCCATCCTCCACAAAGTGTAATGACTCCATTCCTTACATGAGGTATGGCCATAGTGCCTCAGCCATTGGAGACTTGGTGTACATTTTTGGCGGCAGAAATGACACATATGGGGCATGTAACACTCTGTTTTGCTTTGACACAGAAAGCATATCATGGTCGAAACCTCCAGTAAGAGGCAAACCACCTGCTGCTCGAGACGGCCACACAGCTTGTGTCATTGGTTCAAGAATTTACATATTTGGTGGATATGAAGAGGAGGGAGAGTGCTTTTCAAACAGTGTTGAATATCTGGATACGCAAACATTGACGTGGAATGCGCCAAGAGTAACCGGAAAACCAGCCAAATGGAGGGACTTCCACTCAGCAACAGCAGTGGGCACAAACATGTACATCTTTGGAGGGAGGGGAGACAGGAGAGGACAAGAACATTCTGGAGAGGAAGTCTATTCCAATAAAGTCAGTGTATTTGACACAGTAAAAAACTGTTGGTTTAGACTTGCAACCTCCGGAGATGTACCTGTTGGACGCCGGAGTCACTCAGCAGTTGCTTGTGGAAAGCTCATTTATGTGTTTGGTGGTTACAACGGGCTTGAAAGGAAGCATCACGGAGAAGTCTACAGTCTGAACACAGAGACCAATGTGTGGACTCAGCTAAACATATCAGGCCATGGTCCGTGCCCAAGAAGAAGACATTGCTGTTGTCTTATAGGATCAAAGCTTTTGATCTTTGGAGGCACAAGTCCAGTCGCGGGGGCTCCAATCGAGGATGAATACAATCTCCAGGATCACTCAGATCTTTACATCTTAGATCTTGAACCATCTCTCCGCACTCTGTGTAAACTTGCCGTTATTCAGTACAGACTGGACCAGACACCTCTACCCAGAGTGCTCAAAATGGAGTTAAGCATGATGGAGGCTGGAAAGAGCTCTGTCAGATCATCACAAGGCTGAGGTTTGTTCACGCGGGACTTCTAAGTCGAGGATTTAGACGACAGTCTCCTGCAGGTTCTGTACCattctggggcccgtttctggaaagtcccgtaactttacgggccattttcgggtgtgaCAATCCCTCTCTATCTCAcgaacggagaggatttgagtcgtcaaacttcacagtcagtttgctttgaTCGGCTTTCCTGAAAAAGCGGTTGGCAGACTCACAAAAGGCTTTTGGGGCcggaaaagttttcgggacttacgagaaacgggccccaggtcacCAGTGTTGTCGATCCCTTCACTGGGTTAGCAATCCTTCCGCAGCAACTGCATTGCTTCAAAGCGAATCGAAGCCAAAGAAATTTGCTCGAATTTGGGTGTAATATTTCAAGGAAGACTCCAGGCTCCAGTTATTCAAAAGGTGCATAACGctatcactatccagtggataagtcaaaGCAAAATcgattgcgctatccaatggacaGTGAAAATCTGGTGGATAgagctatccatcgtttgaacaactggggcgaGAGgtccgtttctcaaaagtcccggaaacttttcgggcccgaaaagccatttgtaaaactggcaaccgcttgttttggaaagccgatcttttaacgtgttttcaagtaagagaaagaaaaataactgtgaagtttgacggctaaaatcctctccgttcttgagatacaaacggaattgtgacacccgaaaacggcccgtaaagtttcgggacttttgagaaacaggcccctgggcTTGATTTCAAATCGGCTTAATTAGTTCCAGGCTGTGTTATCAACTACTTATGCAACGTCGTTCCCAGGGTGTCTCATCTTCCAGTCCCCTGGATCGTTGGGGAAGATGAGATTCTCTTGGAGCAAGGTTGCTATTTGTGACATGTACGTtttcccggaaaaaaaaaatggaaacccAAGACTTTTGCGTTAGTTTGGCTTCAATTGATTTTGGACCAGTTGTGGTAGACTGGATACGTTTTGATCCAGTTACGGTCGAAATAAGTTGATTTCATTTAACCAGGACAACCTTTGCtgccattttttttgttaacttcAATCCAATTAATAGCTCAAGATGCActaattgtacatgtaatacacTTGGTCGTGCTTTGAAAAGAAGGCTAAAGTGAATTTTTGATATGGTATGTGATATTATTGTGGGACAGTTATGCGGATTCAGTAGATACAAGCCTTGTGGTCAAGAGGGAGTGTTTTAGTTTGTGTGACCATTAATTTTTGTGTTGGTCACGtgatagccaagtttttaattTGTTGGAACAACTCTCCTGCTTGTAGGTGGTAGTTTCTAGCGCGAGATTTGAAACCTGGCAAATGCGGTTTGCCATATTGACCGTTTGTGGAAGATCTGGGACAAGTTACTTTTCGTCCCAGATCTTCCATGAGCTCGTTGAATATGGCGTTCAGATTTGCAGGGTTTACAGAACGAAGTACTACCTACAAGCATGCTATGAAAAAAAGGCCAGGCATTGATGTAGCAAGTAAAAATTGCTGCATTCATAGAAAGGTGTGTATGAATTGACacacattttggaaaatcctTACTGATGTTTTTTAACATGGACAGTTTTTCCGTGTGTTTCTGTTTTCAAAGTCGTTTTCGACACACAGACAAACAAGTATCAGTGGTTGGTGTCTTGTGGTCAGTGTCGACCTTGCTAACGGTTGTCATGGTGATGACAAGGCAAGAACAGGGTCAACAGTGACCAACAAGACCAATTCCAGTAAAGACGTCTTTGCCATCTGGGGAACAGGCATACCAAGTTTCAGTTTTTCAGTCAGTATTTGTCATGCCATTTTTATAAGCaaatttgtcacataaaaaatTGTCACTTGCAATTTACATTATGGACAACGCTCAAGAGAAGAAATTGGAAGGGGCATTGTGAAAGCTCGATATCATCTGTAACCCATGATTGCAAAGGTATTTGGATAAATTTTTATAATTTGGTATAGCTATTGTAGTCATCTTCACCATATTTGCAGAAACATTTTACTCTGGAGGTTATAAATTATTCGTGAATGTGTTACGCTCTTCGAAATATTCCTAAATATTTGGAATGAGCTATCACCTATCTTCATAATCGCGCTGGCGCCAAAAATAATCATTTCATGGAAAGAATATACGAAATAAGATTATTAAACACGAGGAAGTGAATTACATCCAGTTTCTTAACAACAATTTGAAAGATTGAAGAAGCGgggcaaccaaattttgtttgtACTTTTATAgggttgttttattatttttaagaaagtTATCAACTGTTTGTAACAGCTTCTTACCGTTGTTGCGCTTTTCATGAACAAGCAAACAATTTGTTGATTGCGGTTGAGCCCACGTCTCAGTGGTGTTCGTTTCAGAGCGCGCGGAAGCGAGGCTTTCGGCACCTGACGTCATTGGCGGCCATATTGCTGTACTGAATAACAGCGAACAAAGCCTTTTTGGGAATTTGGTtctattattttgcaaaacgcgagcgacattttgctttgttttgtacaccaacattgccgtcttatcacgtgagtgcaagccAATAATAGAAGAGTAATAGATTTCGCGCGCGAAATGCGAAAAAGAGGATGCGTTCCTATCCAGAATTTAGAAGAAGAGAAACTACAGCCACGACAGTTTCACACATTTGGCGTTGTTACTTCGGTTAACACATTCATATGCTAGACAGTACCGTGCTTTACTTCCCACGATAAGGTTAGGCCAGGAAAACCTCGAattacccggaaaaaaaaagcgaaggaaacagtAGAGAATCAAGAAATCACACAGTCCTTCGatagaaaattctttttttaaccCGAAAGTTTCGCTGTTGTTCTTCTGAAACTAACACCGCCGAAACGTGAGCTCAACTGTAATGTAACAGCTATTCCGATCGACGGTTTCGTTTTTCCctgctgtcaatcaaattttccTCGACAAGAAGCGGATCATTGAAATCAGAAACGACTTATTGGACCGAAATTAGCCAATCAATCACATCGTTGACCTTTGACAGTTATTGACGGCAACGAAAAACAAAACCGTTGGGAATTGAAGGTTTAGCGCCAACATGTTTATAAAAGGAGAAGTATTACTTGTAGGAGAAATTGAAAAGCATTTTTGCCAATTTGTATGCTGGATGGAACACATTGCAAGCATCTTTCAACAATCACTTCtggtgaataattaacaattactgCGTGATCTCGCGTTTGATGTGCAACGGTAAATAGTCAACGTGAGATGGCTGTCAGTAATCTCATATCGGACAAGCgcgaataaaaataattactgTAATAAATTTTAATACATTCTTAGATCATTGTTAATTCGCTTCCAACCACCAATTGCTTGGCGTGATCAAACTGTATAAGCTTATAAGCGAGATTTAGTGCGCAAATTATAACGTTAGAAAAGCAATATTcgaggttgaaaatttgataattgttaattaactgcTTTTGAAGATTTTTGTATCCAGTTTGCTTAAGTAACATTTTATAACTCTGTTGTACAGACAAACTTCGTGCCTTTCGCGTGTaacctattcttggtttgcacccacGTGACAGGGCGGTCATGTTGGATGGCACTACAATACATTTTCTTTTCgcggaatttgcataataataaaggttCGTTCCCAGCGGAGAGACGGTTTATAGTTcctgccatccaacatggccatAATGACGTTATATGCAGATCAGCAGTCCCTCTGCAGAAGTTTTCGCACTTGTCCCAAacgtattttaattttttttttgtcgagtCGCTGTTGTAGAGCTTTCAAAAGTTGGAAAAGCAAGCGACAAGAGAGAACAATTTCGGGAGAAGTTGCCTTTTTGTATGTGAACACAAAATAGCCGCTTTGTGGTCATCGAAAAAAGGAAACGTTCTTTGAGGAACACCGATGCGGAGGAGTTCGTGATGTCAATCCGGTATCTAACCAATTACAATTCCTGCCAGTTCGTATGCCAGACTTTGAACAATTTCTTAATCTTTCAAAGCAATTACAAAACGAGTTTTCTGGGAAAAGGTTATGACTTATCAAAGTATGTTTGGGACTAGTTCAGAGGATATGCGTCGTGCGTGAGGTCACGTGATATGCTCTTAAAACAAGTTCAAACTGGATTAATTCCATCACTCTCCAAAGAATGTTGTGCATTTATAACGCTGTTTTCATTcgtaaatataacgaaaattgTATTATATTCAAATTAACTAGGTAATAGGGAAATTTAATTGTAGGGTTAGTAAATTCATTCTTAATTATATTTGCAcattttgtaaatacagtagtcTTAATTCTATTATATTGTTGAATTGTTagaagaaattttttttctgaagataTGTATGTCACATCTGTAACATAAGTCGTAAAGTGTTTTTATCTTGTCCTTTATATCTTTTTATCCCTCTGACAAAATTGAAACTTCATCTCAGCTCCATTGTACAGTTTTTGCTTGTCAAAAAAATACTATACTGCGTAGAtacattgaaaataaaaaaaattcaaattaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58CV6	Kelch domain-containing protein 3 OS=Bos taurus OX=9913 GN=KLHDC3 PE=2 SV=2
Q6AYI2	Kelch domain-containing protein 3 OS=Rattus norvegicus OX=10116 GN=Klhdc3 PE=2 SV=1
Q9BQ90	Kelch domain-containing protein 3 OS=Homo sapiens OX=9606 GN=KLHDC3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006152 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR052637 all species →	Family	Cullin-RING ligase complex substrate-recognition protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46461 all species →	KELCH DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25808	KLHDC3; kelch domain-containing protein 3	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068751618.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

45.2Max TPM

15.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	14.96	45.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	45.24
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	44.89
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	34.30
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	31.04
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	30.55
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	30.02
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	29.83
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	29.05
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	26.48
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	17.69
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	17.47
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	16.50
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	15.87
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	15.19
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	14.55
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	12.66
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	12.55
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	12.25
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	12.25
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	12.11
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	9.39
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	8.96
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	8.63
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	8.39
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	8.28
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	7.45
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	7.37
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	7.02
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	6.89
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	5.56
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.