Genomic Location: chr1:9082780...9115218
NR annotation: XP_044174173.1, protein NO VEIN-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families
| CDS |
| LOC138049283 |
| Transcript |
| rna-XM_068895526.1 |
| Protein |
| XP_068751627.1 |
| UniProt accession | Description |
|---|---|
| F4JTS8 | Protein NO VEIN OS=Arabidopsis thaliana OX=3702 GN=NOV PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001860 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13020 all species → | NOV_C | Protein NO VEIN, C-terminal | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR025605 all species → | Domain | OST-HTH/LOTUS domain | Interproscan |
| IPR036890 all species → | Homologous_superfamily | Histidine kinase/HSP90-like ATPase superfamily | Interproscan |
| IPR024975 all species → | Domain | Protein NO VEIN, C-terminal | Interproscan |
| IPR052957 all species → | Family | Auxin-regulated embryogenesis mediator | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR32387 all species → | WU:FJ29H11 | Interproscan |
XP_068751627.1 in Montipora capricornis.XP_068751627.1.Transcript abundance of XP_068751627.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Polyps | 36 | 29 | 2.96 | 14.05 |
Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM,
StringTie quantification over 36 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.