Gene detail

Detailed information of XP_068751628.1 in Montipora capricornis

Genomic Location: chr5:7157340...7166008
NR annotation: XP_020630385.1, methenyltetrahydrofolate synthase domain-containing protein-like [Orbicella faveolata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068895527.1

CTTTAAGCCAAACTAAAAGATGGCGGCTGAACCTTGACTTTTTTTATCGAGATGAGCAACAAAGAAGCCGCCAGTGCTACATGTAGTCCAACGACAAAAGCAGAAATACGTCAGCGTATTTGGAATTATATCGAAAGGAAtgatttggccaattttccaaGGCCCGTTCATCACCGAATCCCGAACTTTAAAGGAGCAAACGCAGCTGGAGAGAAAGTTACTTTCATGGATGAATTCAAAAATGCCCAAACTGTCAAGGTTAATCCAGACAAGCCGCAAGAATTTGTTAGATATAAAGCATTGGAGGAGAGGAAGATGTTATTGGTTCCTACACCCAGGTTGAGAAACGGTCTTTTTAATCGTATAATTCCACCATCTGGTGCGAACACTGCTTTGCTGAAGAGGTGTGCGGCGAGAGAGGGTATTACAAATTATAGCACACCCGTTGGACTGGATCATAAGGTGCACATTGATCTAATCGTGATAGGGTCAGTAGCAGTGTCACCAAAAGGTTATCGTATCGGCAAGGGAGAAGGCTATGCTGATATGGAATATGTAATGATGGTTTCCATGGGAGCTGTCAGTCAAGACACTGTTGTCATCACAACTGTCCATGATTGTCAAGTTGTGGATATTCCAGATGAATTGATAGATGAACATGATTTGATGGTGGACTACATTGCTACGCCTACAAAAGTTATCAAGTGTGAAGAGGACAAGCGCAGGCCAGTTGGAATACAGTGGTCAAAGATCACAAGCCAAATGTTGAAGGAAATCCCTGTACTAAAAAATCTCAGAGAAAAAGACAGAAGGCTTGGAAAGGATGTCCACTTGAATGAGTGTTGAATCGCCTTCAAGAATTGCAGATGTTTTCATAATAAGGTCTACACTTGTTAAAACTTCAGCAGTGTAAGTTTTCAGTAGTTTTATTCAAATATTGCTGAATCACACTTTTGTCCCCTATACAAGCATATTGTACTATAATTTTGGGGATCCTTGCATTAAAATCTTTATGAGTTATACAAAATGTCTTGACAATAATTTATGACTTTAAGTCTTGAACAAATGATTGGAACCAGGGTCATTTGTTAATGGGATAAACTGTTCACCATAGCTTATTGAATGTTTCTAATGCAACTCTTTTCCAATCATTTTCGGTTGGAGGCGTATCACCTGCTGCAAATACTCATTTCCAGATTTCTTTGCATTAACACTGCAGCTAGTGCGGAACTTTGAATACCGGGTACCtcatttgaaatgaaaaaggcttTATCCCAATAGAATAAAAAACTCAAACTTCAAGACAAACCTAAAGCACAGCCttgaaaaaaagcaatattaaaCTTTTCGTTAAAAGGGAATAATTACTTATAATTGCAGCAGCTTTCATTTCTGCCTTCTGTCatgttttgaaaattgaaaaatattggTTATTCTGCAATTCCTCTCGAGTTTTGTTTAGTTTATCAAATTCGTGTAAAGATCCTTTGAGCTGGAAAGAGAAACAGAACTtgtttcaataataattattattggaatGATATGGTTTCATATCACTGCCCAAAGATGCTGTTGTCTGCCCTGAAATTTACATTGCATACAttctattgtttaattattaGTTATTTTGCAGCCTCTAAATCCAATATTACCAGCAAATgggatttttctttgatttttggtcaaCTGACCAATTTCTTTTGACTTGGAGATCAGTAGTAAGCGAATTCTGGATACTTCCTAGCAACACAATCTATCTGTGAATTGGTCAAGCGGCATGACTTACCGATTTTTGCATTCAGAGGCAGCTCAATCATTATAAGTAACACGAATTAttcaatttgaaaacaataaaaattattggacAGCACAGACTATTGTTATAAATCAGTtaagaaaaatttatttttggaatTCAAGACTCCAAatctttgaaaaagaaaacttattttgtccatgcaCTTTTATTCTTgccattccaaaaaaaaaaagacgacaATAAAATAAAGCACCCAATAATTATTTCAGTTCTTAAGCCATGACGTCCAAGAGTATGACACATTAACAGACCCTAGGTTGCAATATATGCAATAAAACAATACGAAAGACCAACAGCACACATTAAAGGATCCCCCTACAAAAATTACCATTAATGTCATGATGTGACTATATAATCTCCTATCTATAAAAGTTTTGGTTATTAAACGCTGCTTGTTTGAATAACTAATGATGCAAAGGACAATTTCACGTGGAAAGATATGATCATTCTAGTTGCAAAGCCTCTGCTAAATCAACTGGCTTCTGGCCAACACATTGGATGACAAAAAGCTAATCTTGAATATTAATGCTAGccaaaagtttgtttttgatcaaACAGTCAAGTTTTATTTTCCCTAGATGCAGCGATGTTGGAAAAACGAGCTGGATCCCCAAAATGGATGAGACCAAAGCtgtgttcacattaggccttGATTATGatcaaattaaatatgaaatgggttcacagTCCCGGATTAAAactggattataattacttcaaacaacctcaaaggggttgtttgaagtaattacaatgcgtaattgaacagaatggcgagcACATGGTGGTATGAGcatcgctttatggagcgaaggtttggatttgtcttctcTTATTCTCGGAAGCTATCCGTGGTTCTCTCCTCACCTCAAGcacatgatggtgatgataatcgtggcagccacgcgatatggcgccattttgtctcgcactgcgaggttaccctgtgtattgtatttgaatttccgcagatgtgaacagaaccataattgaataaaattgattaGAATACAGTCCTAAGAAAGTATGcacgctgattggttaaaaatcgtgtttctataacgcgatggagacacagagcatttacattttgataattagagttaacaagttgttttcctttttctctttgcgttgttttctaaaagaaatagaaaacatgtactccgtgtttctatcgagttatagaaacactcg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KI24	Methenyltetrahydrofolate synthase domain-containing protein OS=Bos taurus OX=9913 GN=MTHFSD PE=2 SV=1
Q52L34	Methenyltetrahydrofolate synthase domain-containing protein OS=Xenopus laevis OX=8355 GN=mthfsd PE=2 SV=1
Q3URQ7	Methenyltetrahydrofolate synthase domain-containing protein OS=Mus musculus OX=10090 GN=Mthfsd PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010148 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01812 all species →	5-FTHF_cyc-lig	5-formyltetrahydrofolate cyclo-ligase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002698 all species →	Family	5-formyltetrahydrofolate cyclo-ligase	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR024185 all species →	Homologous_superfamily	5-formyltetrahydrofolate cyclo-ligase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13017 all species →	5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068751628.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068751628.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

31TPM > 0

1Conditions

15,918.3Max TPM

706.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	31	706.23	15,918.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	15,918.30
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	662.31
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	655.62
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	649.39
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	506.65
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	494.92
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	490.44
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	484.08
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	477.18
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	469.74
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	461.57
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	457.47
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	446.98
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	261.22
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	242.52
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	237.70
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	233.21
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	232.37
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	231.16
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	228.74
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	227.53
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	221.70
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	219.43
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	176.50
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	176.06
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	129.99
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	124.19
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	122.30
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	79.81
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	53.55
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	51.69
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.