Gene detail

Detailed information of XP_068752001.1 in Montipora capricornis

Genomic Location: chr1:43423216...43426748
NR annotation: CAH3187966.1, unnamed protein product [Porites lobata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138049560

ATGAAGGTACAAAAACCTACAAGAAGGCAAACGCATTGTAGGTATATGCCAAATGCACAGTCTAGAGGAAATTATTTTCACTACTGTCATAATAAGTCAAGTTTGAAGGGAGGTATGCATAGTAATACAGCTGTTGCTCATGATTCACCATGGAATTGTTTAAGTCAAAGGCTTTCTCAGATTGGTTTAATACCACATGATGTTGGTGGATCTGGTGATTGTTTTTTCAAGTCAGTTTCACATCAACTTTATGGAAACGCAGACCGGCATGTAGAAATTCGCATGGCTGGCATAAGTCATTTACATAATCACCCAGAATTATATATTGAAAGTATTTCTGATGATAGTTGGGAAAATTATATTAGGCAAATGTCAATACCTGGCACTTGGTGTGATCATCTCATTATACAAGCTGTTGCCAATGCTCTTAACTGTGTTATTCATATTATAGACTCTAATGCTAATTCACCACAAGCTACAATTATAACTCCTGTTCTTCAGCAGGGAACACAGCAGACAATATTTATTGGATACATTAACCATCTCCACTATGTTTCAACTGTGACACGCACAAACAATCAAAATATAAGTAGATTACAATGTGTAAAGAGAAAATATGTTTCAGAATATAACAAAGACAATGACCTTCCTAAAAGAATAACAAATAGTAAAAACCAGTTGTCCGAAGGAGCCGCTGAAAAAAAGCAAGAAAGACTTGCAAAAAAAAGAGCTAATAGTAAAAAACAATTGTCTGAGGAAACTGCTGAAAAAAGGCAAGAACGACTTGCAAAAAAGAGAGCCAGTAGTAAAAAGCAACTGTCTCGAGAAACTGCTGAAAAAAGGCAGGAACGACTTTCAAAAATGAGAGCCAATAATAAAAAACAATTGTCTCAAGAAACTACCGGAAAAAGGCAGGAAAGACTTGCAAAAATCAGAGCAAATCAGAAGAAACAGTTAAGTACAGAAACTGCTGAAAAAAGGCAAGAAAGACTTGCAAAAAGGAGAGCCAATTACAAAAAACAATCCTCTCAGCAAAGTGCAAAAGAGAGAGAAGAAAGACTGATTGACTTCCCAATTCATGAGCAAACAGAGGCAAAGCACAACATTACAAACAATCAAAATATAAGTAGATTACAATGTGCAGAGAGAAAATATGTATCAGAATATAACAAGGACAATGACCTTCCTAAAAGAATAGCAAATAGTAAAAACCAGTTGTCCGAAGGAACTGCTGAAAAAAAGCAAGAAAGACTTGCAAAAAAAAGAGCTAATAGTAAAAACCAATTGTCTGAGGAAACTGCTGAAAAAAGGCAAGAACAACTTGCAAAAAAGAGAGCCAATAGTAAAAAGCAAGTGTCTCGAGAAACTGCCGAAAAAAGGCAGGAACAACTTTCAAAAATGAGAGCCAATAATAAAAAACAATTGTCTCAAGAAACTACTGAAAAAAGGCAGGAAAGACTTGCAAAAATCAGAGCAAATCAGAAGAAACAGTTAAGTACAGAAACTGCTGAAAAAAGGCAAGAAAGACTTGCAAAAAGGAGAGCCAATTACAAAAAACAATCCTCTCAGCAAAGTGCAAAAGAGAGAGAAGAAAGACTGATTGACTTCCCAATTCATGAGCAAACACAGGCAAAGAACAACATTGATATGTTTCACAATTCCAATATCTATACAGTTTACCAGTGTTCTTTGTGTCAGGAAGCATGGCCAATAAACTTTACGCCAAGATTACATAATCAATATCAGTGTTCAAGGTGCACCAACGATAAAGAGTCGCCAAAGAAATTTTCAAAAGAGAATAATATGATTCCTTCATCAGTTCCTCCTCAGCTTGAGGGCTTAACCCAAGTAGAAGAAATGCTTATTGCACGAGCACTTCCTATTATGCGTGTTTACATAAAGCCTGGTGGGCAACGGGGCTATTCAGGTCATTGTATCAATCTTCCACAAAATGTAGCAGAACTAGCACATTCTTTGCCAAGATACCCAAAAGATTTATCTGTTATAGTTGTCAAGATGAAAGGTAAAGACAACAATTTTAAAGATGTCACAGTTCGAAGACAAAATGTTGCAGATGCACTGCAATGGCTTATTAATAATAATCCACATTACAAAGACATAATTGTGAATCAAGATTCTTTGAACTCATTGCCTTTACATGGTGTACCACAAGATCTACTCTCAGTAGAAACAGAAAATCTTGAAAACATTGAAACTTGTGAGCCTGACTTAGGCCCCCAAAATGGAGAAGACACAGTTTATAATGAAAGCACAGAAATGAGTAGTTTTCTACCTATTCCTGAATGTCAGCAGCAAGAAGTCCAAGCTATACAACAACAATTATTGTGTCACCAAGCTACACATATGCCCTGGCCAACAGTAGACAACGAGCCATTAAATGAGTATGAAAATCCCTTCTTAAAAGAGTTAAGCATCTGTTAA

Transcript

rna-XM_068895900.1

GGGTGTTGGCGGACGTGTTGTTAAATTGGCGGACGTGTAGTTAAAGAATTTTCTTCGCGAACATCGAACATCGAGTGACGTGTTGTTAAAGAAATCGAACAACGGGTGTTGGCGGACGTGTTAAAGAATTTTTAGCTGCTGCTGTTTTCTCGGTAAGTTATTTCTgaatgttgttgaagaatttcgtagctgcttatCAAAGCCTGAGGGAAGCGTGGGCCATTTCTGGACCTTGTACGTCAACCAGGACGTGGTCTGTTTTTCATTGTTCGCCATATTTGAGGCAACTGACCCGTTGTGGTCGCATACAAAACGAACCAAGTAGTGTTGCTCGGCGGCCATTGAGCCAATTGACCCATTGTGgtctcaaaacaaacaaaccaagtATGTTACTTGGCGGCCATTGAGCCAACTGACCCGTAGCAgtctcaaaacaaacaaactcagtCGCTGTTGTACTCGGTGGTCATTGAGCCCATTCAGTTGTAAAACTAATTCAGCTGTTGTGGTGAGGAACAAAGTTAAACCGGCAATAAGCTTACATAAAAATGCCGCTATTTTCAGTGTTCGAAGTGCTACACGAAATCCCTGGCAGGCTTTGGTAACTGCATATAGAAACTGTAAGGCTATGCTTGTTAGTATTTGCACTGCGTATTGTGAAAACAGCATACAATGCTCAAGTAGTTTTAAGAAGGGAGTacctttgaaagaaagcttgaatCGAAGGAGGAAAAGAGACAGGGAGCCATCCCGAATTCCTGTAAAAAGAATTCTAAACGTgctcagaaagaaaaaaaatagaaaaagggtACAGCTGTTTGTTAGACAAACTATTCCAAATAGTTCATTTATCACTTGTTTGAGTCAAAATTACAAAACTTGGCAACTATGGTATAACAGTGATAATTTTTATAGCAAATATGCCTTTAATGCCTTTATAACATGAAGGTACAAAAACCTACAAGAAGGCAAACGCATTGTAGGTATATGCCAAATGCACAGTCTAGAGGAAATTATTTTCACTACTGTCATAATAAGTCAAGTTTGAAGGGAGGTATGCATAGTAATACAGCTGTTGCTCATGATTCACCATGGAATTGTTTaagtcaaaggctttctcaGATTGGTTTAATACCACATGATGTTGGTGGATCTGGTGATTGTTTTTTCAAGTCAGTTTCACATCAACTTTATGGAAACGCAGACCGGCATGTAGAAATTCGCATGGCTGGCATAAGTCATTTACATAATCACCCAGAATTATATATTGAAAGTATTTCTGATGATAGTTGGGAAAATTATATTAGGCAAATGTCAATACCTGGCACTTGGTGTGATCATCTCATTATACAAGCTGTTGCCAATGCTCTTAACTGTGTTATTCATATTATAGACTCTAATGCTAATTCACCACAAGCTACAATTATAACTCCTGTTCTTCAGCAGGGAACACAGCAGACAATATTTATTGGATACATTAACCATCTCCACTATGTTTCAACTGTGACACGCACAAACAATCAAAATATAAGTAGATTACAATGTGTAAAGAGAAAATATGTTTCAGAATATAACAAAGACAATGACCTTCCTAAAAGAATAACAAATAGTAAAAACCAGTTGTCCGAAGGAGCCGctgaaaaaaagcaagaaagacTTGCAAAAAAAAGAGCTAATAGTAAAAAACAATTGTCTGAGGAAACTGCTGAAAAAAGGCAAGAACGACTTGCAAAAAAGAGAGCCAGTAGTAAAAAGCAACTGTCTCGAGAAACTGCTGAAAAAAGGCAGGAACGACTTTCAAAAATGAGAGCCAATAATAAAAAACAATTGTCTCAAGAAACTACCGGAAAAAGGCAGGAAAGACTTGCAAAAATCAGAGCAAATCAGAAGAAACAGTTAAGTACAGAAACTGCTGAAAAAAGGCAAGAAAGACTTGCAAAAAGGAGAGCCAATTACAAAAAACAATCCTCTCAGCAAAGTGcaaaagagagagaagaaaGACTGATTGACTTCCCAATTCATGAGCAAACAGAGGCAAAGCACAACATTACAAACAATCAAAATATAAGTAGATTACAATGTGCAGAGAGAAAATATGTATCAGAATATAACAAGGACAATGACCTTCCTAAAAGAATAGCAAATAGTAAAAACCAGTTGTCCGAAGGAACTGctgaaaaaaagcaagaaagacTTGCAAAAAAAAGAGCTAATAGTAAAAACCAATTGTCTGAGGAAACTGCTGAAAAAAGGCAAGAACAACTTGCAAAAAAGAGAGCCAATAGTAAAAAGCAAGTGTCTCGAGAAACTGCCGAAAAAAGGCAGGAACAACTTTCAAAAATGAGAGCCAATAATAAAAAACAATTGTCTCAAGAAACTACTGAAAAAAGGCAGGAAAGACTTGCAAAAATCAGAGCAAATCAGAAGAAACAGTTAAGTACAGAAACTGCTGAAAAAAGGCAAGAAAGACTTGCAAAAAGGAGAGCCAATTACAAAAAACAATCCTCTCAGCAAAGTGcaaaagagagagaagaaaGACTGATTGACTTCCCAATTCATGAGCAAACACAGGCAAAGAACAACATTGATATGTTTCACAATTCCAATATCTATACAGTTTACCAGTGTTCTTTGTGTCAGGAAGCATGGCCAATAAACTTTACGCCAAGATTACATAATCAATATCAGTGTTCAAGGTGCACCAACGATAAAGAGTCGccaaagaaattttcaaaagaGAATAATATGATTCCTTCATCAGTTCCTCCTCAGCTTGAGGGCTTAACCCAAGTAGAAGAAATGCTTATTGCACGAGCACTTCCTATTATGCGTGTTTACATAAAGCCTGGTGGGCAACGGGGCTATTCAGGTCATTGTATCAATCTTCCACAAAATGTAGCAGAACTAGCACATTCTTTGCCAAGATACCCAAAAGATTTATCTGTTATAGTTGTCAAGATGAAAGGTAAAGACAACAATTTTAAAGATGTCACAGTTCGAAGACAAAATGTTGCAGATGCACTGCAATGGCTTATTAATAATAATCCACATTACAAAGACATAATTGTGAATCAAGATTCTTTGAACTCATTGCCTTTACATGGTGTACCACAAGATCTACTCTCAGTAGAAACAGAAAATCTTGAAAACATTGAAACTTGTGAGCCTGACTTAGGCCCCCAAAATGGAGAAGACACAGTTTATAATGAAAGCACAGAAATGAGTAGTTTTCTACCTATTCCTGAATGTCAGCAGCAAGAAGTCCAAGCTatacaacaacaattattgTGTCACCAAGCTACACATATGCCCTGGCCAACAGTAGACAACGAGCCATTAAATGAGTATGAAAATCCCTTCTTAAAAGAGTTAAGCATCTGTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000098 (this species only)
Ubiquitin family	DUB\|OTU\|OTU · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan
PF20209 all species →	DUF6570	Domain of unknown function (DUF6570)	Domain	Interproscan
PF21107 all species →	STPRs	STPRs (score and three amino acid peptide repeats)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR050704 all species →	Family	OTU domain-containing ubiquitin thioesterase	Interproscan
IPR046700 all species →	Domain	Domain of unknown function DUF6570	Interproscan
IPR048998 all species →	Domain	STPR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12419 all species →	OTU DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068752001.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068752001.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

20TPM > 0

1Conditions

1.8Max TPM

0.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	20	0.29	1.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	1.84
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	1.83
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	1.07
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	1.00
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.98
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	0.66
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.51
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	0.43
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	0.39
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	0.26
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.23
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	0.21
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.21
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.19
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	0.15
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.14
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.13
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.13
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.12
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.03
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.00
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.00
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.00
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.00
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.00
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.