Gene detail

Detailed information of XP_068752002.1 in Montipora capricornis

Genomic Location: chr5:13454777...13471450
NR annotation: XP_029213615.1, carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068895901.1

TGTTACTGTGCTGTGCTTTTGAAGCAGAGTTGTGGATGTCGAGGTGAAAAACAAATGACCACTCATTGTAAATTAAAGTTAGAAAGTTCGGGCTCTGTTTGATAAGCGTAAATGGACAGCACGTCCATTATAACGCAGGTAAACAAGGAGGATGAATCGATGGAAGTGGGCCCATACAATCAAGTTAAACTTCCTGCTTCAATCTCCAAAAAGCCAAGGAGTAGAAACATTTTATCAtcgtttttctgttgttttggcGCTCAATCGACGGCAGCTGGAAGTCCGTGTGCAGTAACTCATACCAATCATAACCACAACCACAATCACAATGATAACACGATCGTAGAAGACAAAGATTCTAAGtacCTTCTTCCAGCTGTAAGGCATCAAGACATGCACAAGAAATGCATAGTGATAGATCTGGATGAAACTTTGGTGCACAGCTCTTTCAAGCCGGTTCATAATGCTGACTTTATTGTCCCAGTGGAGATTGATGGAACCATTCACCAGgtTTATGTATTAAAAAGGCCCCACGTGGATGAATTTCTTCAGAGAGTCGGAGAATTGTTTGAGTGTGTTTTATTTACAGCCAGTTTGGCAAAGTATGCTGACCCAGTCGCCGACTTGCTGGACAAGTATGGGGCATTCCGTGCTAGACTCTTCAGGGAGTCTTGTGTTTTTCATAGAGGGAATTACGTTAAGGATCTCAGTAAACTTGGAAGAGATTTGAAGCATGTTCTCATTGTGGATAATTCCCCAGCGTCATACAGTTTCCACCCTGAGAATGCTGTACCAGTAGCCTCATGGTTTGATGATTTTTCGGACATGGAGCTTTTAGACTTGATTCCTTTCCTCGAAACGTTAAATGAAGTTGATGATGTTTGTGCCTTTCTGAGAAGTGCCAACATGAATGTAATCAAAAGCAGATGTGATTCTCTGGACGCCAGTTGATTTGTAGattatttttacaaaactgagAATATTTTTCGTATATTTTACTCAAGACAAGGAATCGTAAGTTAAAACTTACATAGCCTGCTTTGGTTATCGTGCCATACACGTCTGACAGTATGAAGTGCAACATTGTAACCATCACCGATAGATTGTTTTCACTTACGTGTCTGGTGGCCATACTAGTTAGGAAAACTAGAaaatttttaccaaaaaaaatgtaattcaaTTCCCCAGCGATTTTTGTGGTACATGTACCCAAACGTGGCAactttttttattgtcaatgtaCATCTGTCCTAGATGGTCGCTATAATGTAATGTGAAAACAGTttatattagggactttaaggtCTATGACAGCAGTGGCAATGaaaacatcacctcaaaatACATCATTGTACTATCACAAGCCTTCCGCTATTATTCCATCTCTTTCACGTTGCAAGATATGACCAAAATATCCTCGTATTGTTACGAGTGGAGTCAGAGTAATGGAGAATGAAGGACTCACATTTGTATGCTaatgttgtcatcaaaacctcaacCTTTCACGTTGTAGTCATGCAGAGTTCCACAAAAATATTGTGCTAAAATTTggtgctgcacatgcagcatgcattttttccctcttttctttaaccaataatattcctGTTTTGTGACACTGTCACTGCCATAGCTGTCGGCCTTTCTTAAACACCCTAGTAAAAGTTTAGTGAGCTTGCACCTTACTAGAGGAATCATTCAAGCGTGAACTGGGGccaatttcttctttctttgctCAGCCACTGTTTACTCTAAATAGGAATGAGTTCTCTTGCTGATCTTGTGGACTATTATGAAATTGTCATCTGGCCTATCAACACCTAGAGTAGGTCTCTGGATATTGGGTTACTTTGGCTTAGCACTGAGGGTAGCTCTAATGCTAGTTAAACATTACCTGCTGCCTTGCATGGGGATGTGTTGACCTGCCTGGGGAAATATGttaacaaaattattaataattattattgttaacacATTCTCCCAGGCAAGTAAACTAATCACCACACTTATTTTTACATGCAAATCAATGAACAGTTTTCTCAGGTTTTCTCAGATGTCAATGACCATCAGTGAAATTTGACTTACTCTACAAGGGCCAGACTGAAGGCCCACAACATTTTAGACGTGAAAAGGTTTCATGCTTCAAAGAGCaggttttaaaatatttgcatTGGTTTCATACCTAAAAGTACCTGATCCATTTTAAGGTTTTCAAGAAATGCATGTCAAGCACTAAAGAATCCTAACGTGTTCATGCTAGCTGTATCATAGGTgtctttttttagtattgcgGCAGTTGTCGTATAGCTGGACAGGTATTGTTTTGCCAGCACAGCAGATGCCATTATTTGGTAGCAAGGGTGCTGTGCTTCAGTCGTTATGTAGCTGGCCCAATTTTATGAGATGTTAAATGACCAATCAATAGGTCAAGCAAATTGTGACAGCAAGTTTAATGTTGTCAGCAGAGGTACTGTTTGCAGGTATATTTTTCAAGTGCACAAAATGCACTCAGACTTACATCTAAACTGGCTGCTATGACGACGGCTGGTATGACGACAGCTGCTGTAAGGTGCTTTTGTTCCAAGATGATCTGGTTGACATGAAATTTGCTCTTGAATTGAATTTGTAATGGGGCATTTTAGTATATACATATTCTTTGGAATTGTGAATCAACCAttgttttttacaaataataattttgaagGGAACTGCACTTTACATGTACCTCAGATACTTTTTTAGAGAGTTTTTGTCATATATTTTTAATCACAATATTCATATGGTAGTATTTTTTACTCAGAGTGTATATAGAACTGTAAACCATTTTTGGGCAAGATGTTTTGTCATTGAAATCTATATAATCCTTTTATTTTGTAAAGATGTTTCTAGTGACTGCACAAGTAAAACAGTTTGTCTCTTATCAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GZU7	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Homo sapiens OX=9606 GN=CTDSP1 PE=1 SV=1
P58466	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Mus musculus OX=10090 GN=Ctdsp1 PE=1 SV=1
O15194	CTD small phosphatase-like protein OS=Homo sapiens OX=9606 GN=CTDSPL PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007094 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03031 all species →	NIF	NLI interacting factor-like phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011948 all species →	Domain	Dullard phosphatase domain, eukaryotic	Interproscan
IPR040078 all species →	Family	CTD small RNA polymerase II polypeptide A phosphatase-like	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR050365 all species →	Family	Mitochondrial import inner membrane translocase subunit TIM50	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR004274 all species →	Domain	FCP1 homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12210 all species →	DULLARD PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0008420 all species →	Molecular Function	RNA polymerase II CTD heptapeptide repeat phosphatase activity	Interproscan
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15731	CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase	EC:3.1.3.16	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068752002.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

258.3Max TPM

145.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	145.36	258.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	258.33
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	243.99
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	242.43
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	241.45
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	222.51
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	207.38
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	200.95
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	197.77
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	194.62
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	179.19
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	176.70
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	173.52
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	172.21
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	171.98
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	171.86
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	170.10
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	168.51
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	165.92
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	165.61
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	165.26
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	147.82
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	142.04
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	141.81
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	141.66
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	136.85
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	130.24
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	128.84
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	127.45
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	126.11
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	119.97
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.