Gene detail

Detailed information of XP_068752005.1 in Montipora capricornis

Genomic Location: chr5:13481834...13511082
NR annotation: CAH3175656.1, unnamed protein product [Porites evermanni]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AYD3	Proliferation-associated protein 2G4 OS=Rattus norvegicus OX=10116 GN=Pa2g4 PE=1 SV=1
P50580	Proliferation-associated protein 2G4 OS=Mus musculus OX=10090 GN=Pa2g4 PE=1 SV=3
Q9UQ80	Proliferation-associated protein 2G4 OS=Homo sapiens OX=9606 GN=PA2G4 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005906 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00557 all species →	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047113 all species →	Family	Proliferation-associated protein 2G4/ARX1	Interproscan
IPR000994 all species →	Domain	Peptidase M24	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036005 all species →	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR004545 all species →	Family	PA2G4 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10804 all species →	PROTEASE FAMILY M24 METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_068752005.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26736	PA2G4, EBP1; ERBB-3 binding protein	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068752005.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

209.9Max TPM

114.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	114.57	209.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	209.86
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	209.33
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	208.17
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	193.89
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	193.76
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	188.16
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	160.95
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	153.20
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	152.48
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	147.58
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	140.27
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	137.55
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	136.70
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	132.83
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	127.17
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	125.69
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	123.47
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	123.41
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	117.97
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	113.44
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	108.91
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	108.48
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	107.61
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	107.45
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	107.08
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	105.46
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	105.32
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	94.29
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	92.41
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	91.66
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.