Gene detail

Detailed information of XP_068752020.1 in Montipora capricornis

Genomic Location: chr5:14205017...14269688
NR annotation: XP_029202102.2, fumarylacetoacetase-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5PKH3	Fumarylacetoacetase OS=Bos taurus OX=9913 GN=FAH PE=2 SV=1
P16930	Fumarylacetoacetase OS=Homo sapiens OX=9606 GN=FAH PE=1 SV=2
P25093	Fumarylacetoacetase OS=Rattus norvegicus OX=10116 GN=Fah PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004372 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01557 all species →	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family	Family	Interproscan
PF09298 all species →	FAA_hydrolase_N	Fumarylacetoacetase N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036462 all species →	Homologous_superfamily	Fumarylacetoacetase, N-terminal domain superfamily	Interproscan
IPR011234 all species →	Domain	Fumarylacetoacetase-like, C-terminal	Interproscan
IPR036663 all species →	Homologous_superfamily	Fumarylacetoacetase-like, C-terminal domain superfamily	Interproscan
IPR005959 all species →	Family	Fumarylacetoacetase	Interproscan
IPR015377 all species →	Domain	Fumarylacetoacetase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43069 all species →	FUMARYLACETOACETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004334 all species →	Molecular Function	fumarylacetoacetase activity	Interproscan
GO:0009072 all species →	Biological Process	aromatic amino acid metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006559 all species →	Biological Process	L-phenylalanine catabolic process	Interproscan
GO:0006572 all species →	Biological Process	tyrosine catabolic process	Interproscan
GO:1902000 all species →	Biological Process	homogentisate catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01555	FAH, fahA; fumarylacetoacetase	EC:3.7.1.2	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068752020.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

59.5Max TPM

36.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	36.63	59.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	59.52
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	58.34
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	57.88
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	57.79
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	57.70
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	57.30
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	56.72
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	51.54
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	50.28
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	49.81
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	49.20
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	48.82
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	47.97
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	46.98
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	46.35
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	45.86
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	45.22
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	45.13
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	43.38
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	41.74
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	40.30
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	40.00
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	39.43
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	37.62
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	35.33
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	34.19
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	33.67
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	15.80
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	12.62
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	12.22
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.