Gene detail

Detailed information of XP_068752182.1 in Montipora capricornis

Genomic Location: chr5:16774177...16818977
NR annotation: XP_044164920.1, LOW QUALITY PROTEIN: prolyl endopeptidase FAP-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138049681

ATGGCAACTCGGTACTCTGCGAGTAAAGGCGACTCGAGCGAAGAAGTCCATTTGATGAATGAGGAAGAGAAAATAACCTCGAGTACTTCGCGTCTCAACAAAAAGAGTTTGGTGATTTTCTTTGGGGTCACGGTCGTGGCAGCAGCTATTGTGGTTTCTACAGTGATGATAACTTTGTATTCTGGAAAAGCTGGATCATTTTCCGGGAGAGTAGCACGGGACAAGTCAGAAAGATTTTCATTTAATGATATATTTAGTGGAGATTTCTCAGCTCGAGGGTACTCTTGCCATTGGTTTTCAGATGACGAATATATAACATCTAGTGTGCATGGCCTGGAACTAGTTGATCTGAAAAAGAATACATCACAGCTGTTGCTAAGTGCTGATGATAAGAAGAAACTGGAAATGGAATCACATTGGTTTTCACCCGACGGGAAATATATTTTGTTCACAAAAAAACAGAAACAGCAATATAGGTATTCCTTCTTCGCCGAGTATCATGTTTACGATATCAGCAATAGGTTATCAATCCAAATAAAGCCTGGAGTGCCTGAGGAGGACCCCTCAAAAATACAATATGCTGCATGGGGTCAGAAGAAAAATTGCCTGGTGTTTGTTTATGGAAATGACATATATTACTTGGATTCACCAACCAGTGCTGATGCTAAACGACTAACTGATAGTGGCATACAACACAAGATATTTAATGGCATTCCTGACTGGGTGTACCAAGAGGAAGTGCTTAATTCAGACCATGCCCTTTGGTTTTCACCCGATAGCAGATACCTGGCTTACATTCAGTTTAACGACACTCCAGTCACATGGTATCAGTTCCCGTGGTATGGCAGCAGCAAGGACTCTTACACCACCATTCGAAAAATTGCGTACCCCAAATCTGGATACCCAAATCCCACAGTTAAAGTGTTTGTTAGGGACCTTGAACATGAAAAAGTGATTGAGCTACCTGAACCAGCTAGCTTCATGAACATTGACCATTATGTAGTGAATGTGGGTTGGATCTCCAATCAAGATGTTACAGTCACATGGTTAAACAGGGATCAAAATCAAGTCATTCTGCATATGTGTGAAGGAAATGATGAATCTCACTTCTTTTGCAAACAGAATTCTGAACTGAAAGTGAAAGGTGGATGGGTTGATGATCAGTACGTCACACCTCTGGTATCTCGTGATGGTTCATATTACATCACCTTATGGCCATTTACTCAGGGCTCAGATGGAAAATTTATTCATTTAGCAAAACTCAGTACACATCCACAGGGTCAGCAAACTGCAGAAGCATTGACACATGGATCTTGGGAAGTACTGAAGATCCTTGCTTTTGATGACACCTTTGAAATAGTATACTTCAAAGCAACAAAGGAGTCACCTACGCAATCTCATGTTTACAGTGTCAATGTAAAAACAAAACAACTTCACTGCTGGACTTGTAACCTACCAACGCTAATTCCTGGGAACAAGTGTTCTTATTATGATGCAAGTTTCAGTTTGAAGGCAAGCTGGTACTTATTGTCATGTAGAGGGCCAGGAATACCTGAAATAACCCTACGTAGTACAAAGGTTGACAAAGTAATTCCAATTGAGAACAACAAAGATCTGAGGGACAGATTGAAGGAGGTGGCTCTACCAGTAGTGGAGAATTACACGGTTACTGCTGGTAGTTACGATCTCCATGTGAAGGAGTACCGTCCTCCTGACTTTGATATTAACAAGAAATATGCAGTTTTGTTTTCAGTGTATGGTGGACCAGGGTCACAGAAGGTGACAGATACCTATGGGTATGGATTTGTAAATGGGTATCTTGTGAGCAACTTTGATTTGATTGCGGTCAGTCTTGATGCCAGGGGAACTTGTTGCAGAGGAGAAAGATTTAAGCATGCAGTTTATAAGCAAATTGGGAAAGCCGAGGCAGAGGATACAATTGCTGTTGCTAGATACTTAGCTTCCATGCCTTACGTGGATAAGGACAAAATTGCTATCTGGGGATGGTCATACGGAGGATTCCTTACATCATATGTTCTTGGTCAGAACTCTGGTGTGTTTAAGGTTGGCATGGCTGTGGCACCTGTTACAGACTGGAGATACTATGATTCAATATACACAGAACGATACATGCTCACCCCACAGGAAAATCACAATGGATACGAGATATCATCTGTGTTACCTCTGGCTAAAAACTTCCAGAGTGAAAGCTTCCTTCTTGTGCATGGAACAGGGGACGATAATGTACATTTTCAGAATACTGCTCAACTTGTAGCTGCTCTTACCAAGGCTGGAGTCAAATATCAAGTTCAATTTTACCCTGACAAGAACCACGGACTCAGTGGTGGTGGAACTTCACAACATTTATATCATCTGCTTACACAATTCCTGACTGAAAAACTACCACTAAGAAGTTGA

Transcript

rna-XM_068896081.1

AACGATAAATTTTTCTAATTCATTAATTTGTTGGGATGGTCGTTGGGAGGTGAATATCAGATGAATATACCTTATATTTATCTTGCTTTCCTAAATGGAATTATAATGGGTGTGTAGGAAGAGAATATCTCACCGAAGATTAAGAAATGGCAACTCGGTACTCTGCGAGTAAAGGCGACTCGAGCGAAGAAGTCCATTTGATGAATGAGGAAGAGAAAATAACCTCGAGTACTTCGCGTCTCAACAAAAAGAGTTTGGTGATTTTCTTTGGGGTCACGGTCGTGGCAGCAGCTATTGTGGTTTCTACAGTGATGATAACTTTGTATTCTGGAAAAGCTGGATCATTTTCCGGGAGAGTAGCACGGGACAAGTCAGAAAGATTTTCATTTAATGATATATTTAGTGGAGATTTCTCAGCTCGAGGGTACTCTTGCCATTGGTTTTCAGATGACGAATATATAACATCTAGTGTGCATGGCCTGGAACTAGTTGATCTGAAAAAGAATACATCACAGCTGTTGCTAAGTGCTGATGATAAGAAGAAACTGGAAATGGAATCACATTGGTTTTCACCCGACGggaaatatattttgttcacaaaaaaacagaaacagCAATATAGGTATTCCTTCTTCGCCGAGTATCATGTTTACGATATCAGCAATAGGTTATCAATCCAAATAAAGCCTGGAGTGCCTGAGGAGGACCCCTCAAAAATACAATATGCTGCATGGGGTCAGAAGAAAAATTGCCTGGTGTTTGTTTATGGAAATGACATATATTACTTGGATTCACCAACCAGTGCTGATGCTAAACGACTAACTGATAGTGGCATACAACACAAGATATTTAATGGCATTCCTGACTGGGTGTACCAAGaGGAAGTGCTTAATTCAGACCATGCCCTTTGGTTTTCACCCGATAGCAGATACCTGGCTTACATTCAGTTTAACGACACTCCAGTCACATGGTATCAGTTCCCGTGGTATGGCAGCAGCAAGGACTCTTACACCACCATTCGAAAAATTGCGTACCCCAAATCTGGATACCCAAATCCCACAGTTAAAGTGTTTGTTAGGGACCTTGAACATGAAAAAGTGATTGAGCTACCTGAACCAGCTAGCTTCATGAACATTGACCATTATGTAGTGAATGTGGGTTGGATCTCCAATCAAGATGTTACAGTCACATGGTTAAACAGGGATCAAAATCAAGTCATTCTGCATATGTGTGAAGGAAATGATGAATCTCACTTCTTTTGCAAACAGAATTCTGAACTGAAAGTGAAAGGTGGATGGGTTGATGATCAGTACGTCACACCTCTGGTATCTCGTGATGGTTCATATTACATCACCTTATGGCCATTTACTCAGGGCTCAGATGGAAAATTTATTCATTTAGCAAAACTCAGTACACATCCACAGGGTCAGCAAACTGCAGAAGCATTGACACATGGATCTTGGGAAGTACTGAAGATCCTTGCTTTTGATGACACCTTTGAAATAGTATACTTCAAAGCAACAAAGGAGTCACCTACGCAATCTCATGTTTACAGtgtcaatgtaaaaacaaaacaacttcaCTGCTGGACTTGTAACCTACCAACGCTAATTCCTGGGAACAAGTGTTCTTATTATGATGCAAGTTTCAGTTTGAAGGCAAGCTGGTACTTATTGTCATGTAGAGGGCCAGGAATACCTGAAATAACCCTACGTAGTACAAAGGTTGACAAAGTAATTCCAATTGAGAACAACAAAGATCTGAGGGACAGATTGAAGGAGGTGGCTCTACCAGTAGTGGAGAATTACACGGTTACTGCTGGTAGTTACGATCTCCATGTGAAGGAGTACCGTCCTCCTGACTTTGATATTAACAAGAAATATGCAGTTTTGTTTTCAGTGTATGGTGGACCAGGGTCACAGAAGGTGACAGATACCTATGGGTATGGATTTGTAAATGGGTATCTTGTGAGCAACTTTGATTTGATTGCGGTCAGTCTTGATGCCAGGGGAACTTGTTGCAGAGGagaaagatTTAAGCATGCAGTTTATAAGCAAATTGGGAAAGCCGAGGCAGAGGATACAATTGCTGTTGCTAGATACTTAGCTTCCATGCCTTACGTGGATAAGGACAAAATTGCTATCTGGGGATGGTCATACGGAGGATTCCTTACATCATATGTTCTTGGTCAGAACTCTGGTGTGTTTAAGGTTGGCATGGCTGTGGCACCTGTTACAGACTGGAGATACTATGATTCAATATACACAGAACGATACATGCTCACCCCACAGGAAAATCACAATGGATACGAGATATCATCTGTGTTACCTCTGGCTAAAAACTTCCAGAGTGAAAGCTTCCTTCTTGTGCATGGAACAGGGGACGATAATGTACATTTTCAGAATACTGCTCAACTTGTAGCTGCTCTTACCAAGGCTGGAGTCAAATATCAAGTTCAATTTTACCCTGACAAGAACCACGGACTCAGTGGTGGTGGAACTTCACAACATTTATATCATCTGCTTACACAATTCCTGACTGAAAAACTACCACTAAGAAGTTGATGCTGAGGACAGACTACCCCTTCCTTGGGGGTCTAGTTTAGCTTTTTAAGGGTTCACTCTAGATTTATAACCTATGTGGTGTCTGAGATAAATTAACCATTTGCACCCTAAGAGTTACACTGAGATTTTACTATGTTTACTGCCAGGCCGTTAATTTTCACTCATTTTAGGAAACCAGGTCGGTtgtgaacaacagcaacatccCCTTCAATTGTCTTGCTGAACTACTAAAGCTGTTCTTGTTGTATGACAGGTATTAACTTGACCATGTCAAATAAGGTTAACTCAGTGTGAACTTACTTTGGGGGACATCTCAGTAGCACATGTTTTCTGTATTAATGTTGGCTTACATGCAAGTTTAGCCATAGTTTGGGAAGATAGCACCTTGCAAATGTTTGTTTCACTTGGACAATCATAGTTCTAGGGACAACAACTTTGTTCAATCAATCattataattgttaaatataaattATAACCCCAACcagaatttctgcatgtaaaccaaagcTAAAAATTAGTTTTTCCCTATAGAATCTTTCTAATGAAGGGATCATCCCCTTATCTGTCTTGCTCTTTTCAAAACCCTTCTGGTAAGGGTTTGAGCATGTGTCGtgttctctctcttttttcttttgatggTGGAGCACTATGTAATTTCCTGTAAATTATATTCTTacctttattaattaattaaggaacAAAGGAttgtaaataagttatttagATTTTAAATTATATTCGGTGTTTGGTgtttaattaacccattcacccctaaacctgccatacttagtattttgctctgtctaacgtcaGGCAATTTTAttagtcaatgggttaatcactcactgaaaaactatgtcacaTTAAAATATAGCTTAATTGGGAATCATCAAAGTAATCTACGTTCTTTTATGCACAACAAttttccattaatttttttcttcgttgAATGAAcaaattactttgaattttatttttgaaaggaACTGCTGAAACAGTGAGTTGCCTTGTGTTCAATTTAAAAAACTCAGGTCAAGAACTAACTTTACACATGTGTAGTCTTCTCTCTCTACAATATTAGACAcgaaaaaaggacaaaaagttATATTGCATGAGAACTTTGGGTGGTCCAGTGGGTATTTGAATACAGTGTAGCTTCTATTGATCAGTTTTGTAAAATTCACGTCCACTTATTTTTTTAGTAGCCTCAATTTGGTTTACATATTCCTTTGAATATAGTGAGGCTGTAAAAGGCTTGCATTTAACACTTATCCTGCAAAATCAAGCAGAATATCGCCTGACACTTAGCCGACCAGGCCATAGAcagagttggctaaaatcaggcaatATTCCACAAGATTGAGTGggataattgtttcattattcaTCATATTGATGACACAGCGCAATTTTCTTcgtttattgggaaaaaaagctggaaaaactaccatttttctccgtgacacacaaaattacataTACCGCGGGATATAGGTTGGGTACACACGATGAATATTGAGctcgctatgaccatatttggacaattttacaatgtgttgaataataagtACCATTATTTgcaaagggatatttttgtttggCCATCattaaaaaggtctatttttaTCTGTTCTTTAGTTTGGGTAGCGAGCCAATCTTGAAAGCAATATTAATACAATGCCAAAAGAATTTGTCATTGGTCAGCATTAATTGTGTTGATGGCACTATAAAGCAGTAAAAActatattattaattttctttccttcctcCACTGCAATGGCACAGTTTGCTCACATTGGTAATAAATAACCTTGGATTTTCCTGTAGCAATGGCCCTCATTAGGTTATTACTCCTGAATAAATTTGTGATAACAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97321	Prolyl endopeptidase FAP OS=Mus musculus OX=10090 GN=Fap PE=1 SV=1
Q12884	Prolyl endopeptidase FAP OS=Homo sapiens OX=9606 GN=FAP PE=1 SV=5
P22411	Dipeptidyl peptidase 4 OS=Sus scrofa OX=9823 GN=DPP4 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001275 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00326 all species →	Peptidase_S9	Prolyl oligopeptidase family	Domain	Interproscan
PF00930 all species →	DPPIV_N	Dipeptidyl peptidase IV (DPP IV) N-terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001375 all species →	Domain	Peptidase S9, prolyl oligopeptidase, catalytic domain	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR002469 all species →	Domain	Dipeptidylpeptidase IV, N-terminal domain	Interproscan
IPR050278 all species →	Family	Serine Protease S9B/DPPIV Subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11731 all species →	PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068752182.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068752182.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

31TPM > 0

1Conditions

1,244.9Max TPM

71.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	31	71.40	1,244.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	1,244.86
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	93.67
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	93.43
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	75.08
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	71.91
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	69.35
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	67.09
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	62.66
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	61.95
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	54.08
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	52.62
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	44.52
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	42.87
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	41.65
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	39.95
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	39.20
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	38.41
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	37.95
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	36.56
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	36.00
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	35.13
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	30.33
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	28.56
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	27.80
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	26.98
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	26.27
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	26.00
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	17.89
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	17.07
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	16.80
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	13.89
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.