Gene detail

Detailed information of XP_068752185.1 in Montipora capricornis

Genomic Location: chr5:16837063...16844393
NR annotation: XP_044183673.1, thioredoxin-related transmembrane protein 1-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0Z7W6	Thioredoxin-related transmembrane protein 1 OS=Bos taurus OX=9913 GN=TMX1 PE=2 SV=1
Q8VBT0	Thioredoxin-related transmembrane protein 1 OS=Mus musculus OX=10090 GN=Tmx1 PE=1 SV=1
Q9H3N1	Thioredoxin-related transmembrane protein 1 OS=Homo sapiens OX=9606 GN=TMX1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007076 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR052454 all species →	Family	Thioredoxin-related transmembrane domain-containing protein	Interproscan
IPR017937 all species →	Conserved_site	Thioredoxin, conserved site	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46107 all species →	DUMPY: SHORTER THAN WILD-TYPE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0015036 all species →	Molecular Function	disulfide oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26746	TMX1_4; thioredoxin-related transmembrane protein 1/4	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068752185.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

185.5Max TPM

107.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	107.39	185.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	185.53
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	163.84
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	161.26
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	159.39
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	157.11
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	154.52
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	154.35
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	154.17
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	150.64
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	146.82
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	141.89
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	138.58
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	127.58
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	127.43
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	119.95
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	118.34
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	115.11
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	115.10
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	114.44
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	114.38
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	114.22
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	113.57
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	113.23
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	111.71
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	111.05
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	109.74
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	105.74
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	100.12
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	91.03
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	75.04
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.