Gene detail

Detailed information of XP_068752248.1 in Montipora capricornis

Genomic Location: chr5:17700859...17718013
NR annotation: XP_015769416.1, PREDICTED: regulator of G-protein signaling 7-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068896147.1

TTCGAGGTCATCGGTAAACAAATCTTTCGAGGTGAAAAGGTGATTTTCAGTTTGCGAGAACGATCTAGTATATTTCTATCCAATAGATAAGCCAAGTTTTAAAGTATTTCGAATGCGACCTGTTCAATTCGTGGATTGTTTGTTTTGACGCAGAGCTCTTTGCCTACGGATGTGGCCATTGGTCAAAACCGACCCGCATCGGAGCGAGGGAATTCTTGACAATACAAAGACGCTTTTCCTCTAGACATTTTTACTAGTCTTCGTTTACAAGATAGCGGAACGCAACACAATCATGTACTGTGCCTCTCGTAAGTTCCATGTTGGTTTATCAGAATAAATGGTTTGGTTAAAATTTCTTCATGATGATGGAACACCAGACTTACGATGGTGCGGCGAACGACGAACAGCCACCTCATGCTGcagtatgcaaaaagATGGAGAAACTCATCCATCTCATGCAAGATGAAAAGTCAGGAGTAACCATCCGAACAGTGAAGAGTTTCATGTCAAAGATTCCAAGTGTTTTTACAGGTGAACAACTTTTGGACTGGGTTATGTCTAATAGTTCAATAGAGGACAGAGGTGCAGCAGTTCATTTAGCTTCTCTTCTTGCTGCGTATGGATATATATTTTCCATTACTGATCACCATCTAATGGTCAAAGATGATGCTTCATATTATAGATTTCAGacaccATTCTTTTGGCTATCAAACAATTGGGAACCAGAGAATGTTGACTATGCTGTTTATTTGTGTAAGAGAACTATGCAAAATAAATCAAGACTGGAATTAGATGACTATGAAGCAGAAAATCTCGCCAAGTTACAAAGAACACTGTCACGGAAATGGGAGTTTATTTTCATGCAAGCTGAAGCACAGGCAAAAGTTGATAAGAAGAGAGATAAGATGGAGAGACAAATTCTAGACAGCCAAGAAAGAGCATTCTGGAATGTTCACAGACCGCCAccAGGTTGTGTGTCTGTTACAGAAATAGACATTAAGAAAGCCTGCAAAGCTGGTGATACATCCCCTCGTCAAAAGAGAAAGGTCAATTTTTTGAATGACGATTCTTCACCATCTTTGTCATCTTTGTCTGCTTTGGATGGCGTCAAGAGGGAGGTAAAGACATTGAGGGAACAACTTCATAGAAGACGAATGAAGACTTCACAGGCCTCTGAAAGTCTTATTCAAAGATGTGATCAGTACATGGAATATGATGCATTTGTCTGGTCACCAGAGCCTTCAAATCCCTGGATAACAGATGATATTACGCTCTGGGAACAAGATAAAAGTTTACATTACGTACCTCCACGGCGCGTCAAGCAATGGGGATTCTCTTTTTCGGAACTTCTTGCTGACCCTTTGGGAAGAAGACACTTTGCGAGATTTTTAGAGAAAGAAATTAGTGCTGAAAatttaggattCTGGTTGGCTTGCGAACAACTGAAATCAACGCCAATCCGAAATGTGTCGGTTAAAGCCAACGACATATTTACTGAATATTTGTCTGAAAGTGCAACGTCTCCCATTAACGTGGACTGCAAGACCAAAGAAGAGGTTGAATTAAATCTAAAACATCCGTCACGATACATGTTTGACACAGCACAGGACCACATTTTTCAGTTAATGAAGTCGGACAGCTATCGTCGTTTTATCCGCTGCGATCAGTACAAAGAGCTTCTCAATGCTCCTGCAAATAAGCAGAAAAGTCCACTGCCTTCAAAGCCATTACATAATTTGGCGAGGATTGCTGGCAAGACATGACATCACGTTCGTAGGATATGGTAGAATGGTGCCAAGTGTTTTCTTTGTGGATTACACATTTTAGTAGAAATCCAAGTGTATACTGCCTTGCTATTTATAAAGAGAACACCGGCCTTTTGGaccaaaacaaaacagtgaCGTCACGGTCTTGCTGCTTCTGCGATTTATCCGGTGCAGAGGTCAGAAAAATTATGACTGATGCTATCAGGTTCGGAGCAAAATTAAAGGTCAACTTAGTAAATACGAAAttaaggttcttcatggaaaatgGTTGTGAAGATTTGTGATTAGGTACAGCGCGgtttttgtcatttaaattgtcgtttaatttttcatcgAAACATTCTGTGagtttttagtaaaaaaaactGGGTCCTTAGCTATTATCggggaaatggaaaaagaagTTTCCTGCAAGGGTTTTGTCTCAGCACAGCACGATCAGTGAGattttttagttttcatttaACATGAAACAACATTGAAATCAATCATCAGTGGCAAAAAGAAGAGGAGGTTTGCTGGTGGGTTTCAACGTATACGTGTAGTCAGTACTCATTTCCAGTTTTCTAGGAGATTGAAATTCTTGATCCTAGTCAATTCGTTGTGCTAGGCATCAGAGTACGAATTTTTCATTCGGGAGTGTGTCCTTACAAGTTTCATTCGTGTGCAATCCTGCAGGATTCCAGTGGTTCATAGAGGCCTTAGTCAGTGCTTAGTGCTTAAAGATAAGTGAGAAGGATGACCACTCAACTTCAAGCTCGTTAAATTGTGGTTAACTTTTGTTGATGAAAAATAAGGTTTAAATGAGTGAGAAATATATCATTAATAATCAAAAGTGTTTAAGTAGACTTAtaactggaaaagagtgagtttgTGAGAGATCATATTATACCAATTTCTTTTCCTTAAAATATGGGAAAGGGATGCAATTCCGCAATTTCAAGTGATCTCCTTTTATGAGGTATTTGTACGTTTTGAAGCTTAATGCCTGTCATTTTCATAACGGAAGAAAAGTGCAACTGCATTAGTGTTTGCATCCTAACGGATCGCGATTGTGTTGCCGGACAACCTTCATGGTCGTACTTTTAAAGTtatactatgatcaaaaatcacttcctttttttcttcaaattttgaaagtgtatttgctCATCACCTGCCTATCAAaattttttgaactttgatttttatccaaagaccGTTTACTTTGCACGTAAATTTTGAatatttcatggtccgccatcaCACTggcacgttcaaaactgaccgactggacctcataGGGCTGGATCTaggggaaaatgacgtcatttactcactaacTTTAAGTTTTAGCGTGTAAATGctgcttattatatatgcaaaacacgagtttaaaagtctgaaagcccgaatcTCCCGTGCCagatattaattcagtcgcgtacacacgcattgcgttcttaaactattgagaaCTGGTGAGTCTTaaatcattttctcctcgatccagctctctcaatatCGTAAAGTTAGTAATTGCGGactattaaataggaaaattccagtttaaATGAAATGGTGTCTTTTAAATAAAGGCTTGAAACTAAGGTCACTCAgtatttagttaacatagttttgaaatgcaaaggagaattaattttttttggtcagagtaccactttaaagctCAGTACATAATATCTTTCTTCTTGGACATTGCCCACTGCGCATGTCAAATCCCAATGTGTTAAACCTTTCAGATACTCCCAGATATTTTGTATGCGAAGTTTCATCGGAAGACAATATGGAGACTATTTCTTCAGGCATCAATTTGCGACATGCTGTCAGTGATAAAATTTGAAGAGTTTAGCGTTACTCTTTAAAGAGATCCTCTTCGGGGGGTCATCACAATCTGCTCGAAATAgaaaattaatataataatCATGATGTGTTGAATGTGAAATGGATACATATCAAACTGTTTTAATAGTTATTAAATAGAAATGACGTCATAATCTGGCATATACGTTATTAAATTACTTATTTAATTGTGACGGAGTTAATTTCAACCGTctaaaaatgatttatttcGAAAAATATTCTTTATTGAATTTAATAAAATTGATTTTTCTACTCTTGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49803	Regulator of G-protein signaling 7 OS=Rattus norvegicus OX=10116 GN=Rgs7 PE=1 SV=2
O46470	Regulator of G-protein signaling 7 OS=Bos taurus OX=9913 GN=RGS7 PE=1 SV=1
O54829	Regulator of G-protein signaling 7 OS=Mus musculus OX=10090 GN=Rgs7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004228 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18148 all species →	RGS_DHEX	Regulator of G-protein signalling DHEX domain	Domain	Interproscan
PF00610 all species →	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan
PF00615 all species →	RGS	Regulator of G protein signaling domain	Domain	Interproscan
PF00631 all species →	G-gamma	GGL domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR040759 all species →	Domain	Regulator of G-protein signalling, DHEX domain	Interproscan
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR015898 all species →	Domain	G-protein gamma-like domain	Interproscan
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan
IPR036284 all species →	Homologous_superfamily	G-protein gamma-like domain superfamily	Interproscan
IPR047016 all species →	Family	Regulator of G protein signaling 6/7/9/11	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR047017 all species →	Homologous_superfamily	Regulator of G-protein signalling 6/7/9/11, DHEX domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45746 all species →	LP21163P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008277 all species →	Biological Process	regulation of G protein-coupled receptor signaling pathway	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16449	RGS; regulator of G-protein signaling	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068752248.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

61.9Max TPM

28.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	28.91	61.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	61.92
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	61.35
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	61.32
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	52.69
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	52.56
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	50.73
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	50.33
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	48.84
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	47.28
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	46.61
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	46.47
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	35.10
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	34.87
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	33.47
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	32.13
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	29.82
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	29.39
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	25.10
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	24.75
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	24.26
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	22.57
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	20.76
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	20.20
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	19.62
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	19.31
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	19.15
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	18.22
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	17.52
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	17.30
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	17.13
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.