Gene detail

Detailed information of XP_068752255.1 in Montipora capricornis

Genomic Location: chr5:18050473...18060603
NR annotation: XP_029208165.2, EF-hand domain-containing family member B-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068896154.1

GAGTTTTGTTCACATTAGTCATTGATACCTGAGCATTATGCTCTGTAATTATTTTCCGACATGGGCATGCCTAAAGAGCCAGTTAGAAGCAAATTGGTGGGGATTTGTGGAACAGCAAGAATttgaaccggaagtgaactTCGCAGGAAACGAGTTGTTCGGTAGCCTGGCAACCGTCTCCTAGAAACGGTGCGCTTTCAATACAACTCGGACAGTTCATTTTCAGTGGAAGCAATTTTCTCTGAATTACTTCTCACACAAAACGATACCTGGACAAGCTATATATAGTCAGTTTAATACATCAGGAAAGTTACACTGCCGAGAGAATCTGAGCTTGAACGTTCGGGAAACTTATTCTAGATTTACCGCAAGAACTTGGGAGCGAAAAATGTTGAGCAACACCGGCAGATTTGTTGACCGAAATCCAGGAATTACTGCGgCGGGAAAGCTTTTCAATGTAACAGGAGAAACCTCCGGAGATTGCCTGCAAATAGCACAATGTCCCACCAGGCCAGAAACAGTGAAAAAGTTTCGAGGAACAACGCAACCAAAGGCAGGAAAAGAACGAGTGTTTTATGGCAGAGCAAATGACCCTGACGTTGCTTCACAAATTTCTCATGGAGTTAGCACCAAAACCTCGCTTGTCGCAGGGGATCTCGTTAACCCTACAAGGAAGAGCCTCTTTTCACAACGGATGCTTGAGAAAAAAGAGAGTCTTTATGCCAGCAGAAGGAATGCACCGTTAGGAAGCTCTCATGATCAGAGGCCAGGTTTACCAAAGGGAATTGGTCGAACTGATGTCATGTATGGAGTTAAAACCATCAAAGATGGAAGTGCAGGTGAAATGGTGAACCCTGCTAAGCCTGCAGCACAGGTAAACACAGAGTCTCTTCAAGGAAAACACCTTTACAAAGTCAGCCATCATGACTTTGAAGTTGGTGAAATGGTGGACAGGAAATATGACTGGAGCAGGATTCCTAAAGAAAGCAAGTTTGGTGTAGAAACACCACACAATAATGATGGCATACATGTTCAAAAAAGTCTCAAGTGGCTCCATGAGACACAACAggaaaaaacaacaaaaattgtctcAAAGCGAGTGGATGACTTCCGTGAAAGGACCCAACCACAACTTGGGAAAGTGCATGACCCAATCAAAGACACCTTGAGAGTTGCTCCTGATCATTCATTTGGTGTTATGGTAAAACCTGACGAGTATGGTGCGGGGGATTTGATTCACATGAGGGTTCCTAGCAAGTACCTTAGAGGCCGTGACAGAGAAAGAGGAGTGCTGGCTGCAGTGCGACATCACTTGAAAAAGGCCAACTACCACAATTTTCATGACCTTAAAGCAGCTTTTGAATATTATGATAAGGACAAGTCTGGGAAAATTTCCTTGAATGAGCTGCGTGAAGTCTGCATTCAATTTAACCTCCCTGTGGAACCCGAGCTGTTGGAATGCATGCTAGATTATTGTGATATTGATGGTGATGGACAGATAGATTACCAAGAGTTTGCAAACTTCCTGAATTGGAAGGACAAGATGTCATCAGGTGGAGTGCCAGGTTCAAAGACAAAGGAAGCAGAGAAAGGAGATGAAGCTCAGGAACAGACAAAAGGAGACGTGTCACCCACAAGACTTGAAAAACAGATTGATAAGGCTGTTGGTGGCTGGAACCCTTCATCCTCTCAATTTAATGCTGTAGCAGGAGGAATAAGGACAACAGGATGGCGAGCCTATGGAGTGCCAACTATCAGATCTGATTTACCAGCACCAACAACAAGACGAGTAGCTGACACAACTAACTATGGTGATGAATCTGATGCCTATGGGTTAATAAACCCATCAATCTACAGCAATCACGGAGTTCATGAAAAGGACTTTTTTCAACCAAGGGACCAATATGAGATCAGAAGAATCTTTGATGGAATAGGAGTTGAGATGACAAGTGATGTGTTTGAAAAGATCTGGGAACAGGCTAGCACTAGGCACCCAAGTGGGCTGGTCAGCGTGGAGTCTTTCAGAGGAATTATGGATGAAGTTAATGCCCAAAAACTTGCAGAGACACAAGTTGCATGATGCAATTTAATTGCCATGGATACATCAATTAAGAGTTCTAAACAGGAACACAATTATTTTTCACTAGGTTCCGACTAAAAAACTTATTAATGGCAAAAGAATATTTCCAATAAGTAATGTTTTCACAGAAAATGTTTATTATGAGTGCCTGAACCaaaagcaatattattatttatcatgttgtaaaataaactttcaacaaCGTTCTTTGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1MMV1	EF-hand domain-containing family member B OS=Bos taurus OX=9913 GN=EFHB PE=1 SV=3
Q8N7U6	EF-hand domain-containing family member B OS=Homo sapiens OX=9606 GN=EFHB PE=1 SV=4
Q8CDU5	EF-hand domain-containing family member B OS=Mus musculus OX=10090 GN=Efhb PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006694 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR040193 all species →	Family	EF-hand domain-containing protein EFHC1/EFHC2/EFHB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12086 all species →	EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23929	EFHB; EF-hand domain-containing family member B	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068752255.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

26.4Max TPM

10.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	10.40	26.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	26.38
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	23.94
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	23.31
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	19.14
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	17.60
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	16.39
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	16.26
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	15.41
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	15.34
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	14.84
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	14.40
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	14.31
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	13.93
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	13.68
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	12.84
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	12.50
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	12.46
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	12.33
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	11.77
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	11.64
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	10.95
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	10.46
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	9.81
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	8.74
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	5.75
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	5.21
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	4.97
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.