Gene detail

Detailed information of XP_068752471.1 in Montipora capricornis

Genomic Location: chr5:21339163...21364222
NR annotation: XP_020627624.1, uncharacterized protein LOC110064862 isoform X2 [Orbicella faveolata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138049903

ATGTCGACTCGGAGTAACGAGGGCGAAGCCGAGGAAACAAAAGATCGCCTTGGCATCTCAAACCCAACGTCACGCGACAAGCTACTTGCTGCTGTCCATGAACTCAAATTGTTTGGTGGCCCTGTTCCAGATGAAAGGCATTTTCGGCTGAATGTTCCAGGCACCGGAAATAAAGATGTAATCACCGCAAGATCAAAGAGGAGATCCTTACCGGTCAGGCCCCCGGAAATGCAACTACGCAGCGTAGGTTCTCTAAATACGCAAATCTTGGACGCGATCGAACGAAAAACACCACAGGAGGTTCTCTATGAACAAAGCGAAGAGATGTGCCAAGATCCCAAAAAGGGGAAGGTTAAAGTGCATACAGGAGGACTTCAAAGTGATTCAGAGTACTCAACAGTTGAAATAACGACACAGACGACAAGCAAAGAGCTTGTCAGTCTACTTCTTGCGGTTTGTGAGGCTGATGCAAAGGATCGCAATTTGTTTTATGTGGCAGTGGAAATTGGGATTCAGAAGAAAGATTCCAGTCTTCCCTTGTCTCAGATGATGGTTTTGGCGGATGATGCTCGACCATTGGAGATTCAATCCCGTCAGCCAACTGGAGAAGCCAAGTTTCATTTGAAGATGAGGAGTGGTGGGATTTTGCGTGTACAAGCAGGAATTTTGAGTCCTGGAGCAGCGTACAAATGCGTTCAGATATCTCGTCAAACCAGAGCAGATGAAGTGGTGAAGATGATCTTATCCAGTTACGGCAGTGATGAGCCACCAGAAAAGTTTGTCCTCGTAGAGAGTTTGTCAGATTCAGAAGTTGGTCGTATATTGGAAGCGGATGAATGTCCTTTGGAACTGCAGTCCCGTTGGAGTGCTGGAGAGCAAAGAACGTTTACTCTGACACAAGCCGAGTTTGAAGGAATTCTACAGAGCGATGATGATAACAAAGTAACAGCCAAATCTTCGTTTAACAGTGGTGAGAACTACTTTCTTAATGAAGATCAGTCCCCCGGTTTGTCAAATGCTAATTCTGAGGAAAAAGAGAACATCGAACAGTTCCGAGAGAGAATAGATGCTCTGGACTTGGAAATCGGAAATGAAGCGAATCATGTCAAACGCAAAGTGTCACAGATTGATAATTTGAGGCATAGATTTCACGTGTATCAAGAAGGTCACCGAAAGCAAAGCAACAATGGCACAGTTGACGAATCGGTGCTTTCCACGGACGGTCCCAAGAGGCGGAAAGTCTCGCAAATTGATGTTTTTAGGAGCAAATTTCTTGCTTATGCTCATAACGGGAGCAAAGGAGAAACGCCGAGTGGTTTTAGTCCAGTTATTGAGAATACAAAAAGAGAAGACAATAATATTGAGAATAAAAGTACCCGCAAGAGTTCTGCATCTCGCGCGGAGTCCTCGGACGGAGAGGATCTTCCCCGTTTCTCATCTTCTCCTCCATCCCATCTTCAACGTAACAACCAGGACAGTGACAACGTCTCCTGTCAACAAAACGAAAAGAATGTTCGCAAGAGATCACATCCGAATCAACTTACGTTAGCGACTGTTCTTCAATATTGCAGACTTGTAACTTTGACGCTCAATAGAGAGCAGGGAGAGGGCTGGGGCATAGAACTAGTGCATGTCACCTTAACGGGTTCCTCAACGGGCGGAAATGACGAAGATTCGAAAGAGGAAGAAAGAGTTGTTTACGTCCAGCACAACGGCAATGGGCAGAATTCGATCGTGAACACATCTTCTTCAGATGACTTTGACATGGATTTAATAAATTCATCGGAAACCAGTTCTCGGCAATCTCCTAATAGCTCTGGGTCAAGTGAACAAGAGATAGCCTCAATATTAGCAAGGACTCAACACTCCACCTTGAATGGTGAGAAGACCACTGACGACATGCGGCAAATGGTTCACAAACAGAACCTAAGAAGAAGAATGGGAGTTACACAGGGGTCGGGCTCCAATAATTTTAATCTGGTCCCTCCTGAAGCAAGTCCCATTTTATCAAGGCCTACTTCAGCGTCTCAAGAGAGGCCAATCAATCCCCTTCCTCAAAGACCCTCTTCTGCACTTGCGCAGTGGAAGAAAGAAGGAAGTCCCCAGCCTCGACCTGGAGTGCGCGTAGTTGCACTTACCGAGGGAGGGGTGGCGGAAGGCAGTGGTGAACTCGCTGTTGATGACGTTATCGTTGAGATCAACGGACAGTTTGTGCTCAATTCTCCGCTTGAGCCCGTGATCGCTGCAATGCAGGAATGTAACACTGTATTTATGGTGGTGGCGAGGGCGAAAAATACCGAACCGGAAGAAGAAAACAAACCGGATTATAGGGACGATCTCAAGGAGTTAACTCTTCAGATACAAAATCTTGTCACCAAAGTCAGCGAGATGCAAAGCGACTTGAAGAAGAAAGATGATAAGATTAAAACTTTGAAGAAGATGGTCAAAAAGAACAGCAGTGACAGTAAAGGAAAAATTTATGAGTCTGTTCAAGTCCTTGTATAA

Transcript

rna-XM_068896370.1

TGCGCGTCAAGTTGATTCCCcgattatttttcaaagaatcaCAAAATTAGAGTAGCTTGCAAGCTTAAGTGGACAACTGGTCACAACAATGTCGACTCGGAGTAACGAGGGCGAAGCCGAGGAAACAAAAGATCGCCTTGGCATCTCAAACCCAACGTCACGCGACAAGCTACTTGCTGCTGTCCATGAACTCAAATTGTTTGGTGGCCCTGTTCCAGATGAAAGGCATTTTCGGCTGAATGTTCCAGGCACCGGAAATAAAGATGTAATCACCGCAAGATCAAAGAGGAGATCCTTACCGGTCAGGCCCCCGGAAATGCAACTACGCAGCGTAGGTTCTCTAAATACGCAAATCTTGGACGCGATCGAACGAAAAACACCACAGGAGGTTCTCTATGAACAAAGCGAAGAGATGTGCCAAGATCCCAAAAAGGGGAAGGTTAAAGTGCATACAGGAGGACTTCAAAGTGATTCAGAGTACTCAACAGTTGAAATAACGACACAGACGACAAGCAAAGAGCTTGTCAGTCTACTTCTTGCGGTTTGTGAGGCTGATGCAAAGGATCGCAATTTGTTTTATGTGGCAGTGGAAATTGGGATTCAGAAGAAAGATTCCAGTCTTCCCTTGTCTCAGATGATGGTTTTGGCGGATGATGCTCGACCATTGGAGATTCAATCCCGTCAGCCAACTGGAGAAGCCAAGTTTCATTTGAAGATGAGGAGTGGTGGGATTTTGCGTGTACAAGCAGGAATTTTGAGTCCTGGAGCAGCGTACAAATGCGTTCAGATATCTCGTCAAACCAGAGCAGATGAAGTGGTGAAGATGATCTTATCCAGTTACGGCAGTGATGAGCCACCAGAAAAGTTTGTCCTCGTAGAGAGTTTGTCAGATTCAGAAGTTGGTCGTATATTGGAAGCGGATGAATGTCCTTTGGAACTGCAGTCCCGTTGGAGTGCTGGAGAGCAAAGAACGTTTACTCTGACACAAGCCGAGTTTGAAggAATTCTACAGAGCGATGATGATAACAAAGTAACAGCCAAATCTTCGTTTAACAGTGGTGAGAACTACTTTCTTAATGAAGATCAGTCCCCCGGTTTGTCAAATGCTAATTCTGAGGAAAAAGAGAACATCGAACAGTTCCGAGAGAGAATAGATGCTCTGGACTTGGAAATCGGAAATGAAGCGAATCATGTCAAACGCAAAGTGTCACAGATTGATAATTTGAGGCATAGATTTCACGTGTATCAAGAAGGTCACCGAAAGCAAAGCAACAATGGCACAGTTGACGAATCGGTGCTTTCCACGGACGGTCCCAAGAGGCGGAAAGTCTCGCAAATTGATGTTTTTAGGAGCAAATTTCTTGCTTATGCTCATAACGGGAGCAAAGGAGAAACGCCGAGTGGTTTTAGTCCAGTTATTGAGAATACAAAAAGAGAAGACAATAATATTGAGAATAAAAGTACCCGCAAGAGTTCTGCATCTCGCGCGGAGTCCTCGGACGGAGAGGATCTTCCCCGTTTCTCATCTTCTCCTCCATCCCATCTTCAACGTAACAACCAGGACAGTGACAACGTCTCCTGTCAACAAAACGAAAAGAATGTTCGCAAGAGATCACATCCGAATCAACTTACGTTAGCGACTGTTCTTCAATATTGCAGACTTGTAACTTTGACGCTCAATAGAGAGCAGGGAGAGGGCTGGGGCATAGAACTAGTGCATGTCACCTTAACGGGTTCCTCAACGGGCGGAAATGACGAAGATTCGAAAGAGGAAGAAAGAGTTGTTTACGTCCAGCACAACGGCAATGGGCAGAATTCGATCGTGAACACATCTTCTTCAGATGACTTTGACATGGATTTAATAAATTCATCGGAAACCAGTTCTCGGCAATCTCCTAATAGCTCTGGGTCAAGTGAACAAGAGATAGCCTCAATATTAGCAAGGACTCAACACTCCACCTTGAATGGTGAGAAGACCACTGACGACATGCGGCAAATGGTTCACAAACAGAACCTAAGAAGAAGAATGGGAGTTACACAGGGGTCGGGCTCCAATAATTTTAATCTGGTCCCTCCTGAAGCAAGTCCCATTTTATCAAGGCCTACTTCAGCGTCTCAAGAGAGGCCAATCAATCCCCTTCCTCAAAGACCCTCTTCTGCACTTGCGCAGTGGAAGAAAGAAGGAAGTCCCCAGCCTCGACCTGGAGTGCGCGTAGTTGCACTTACCGAGGGAGGGGTGGCGGAAGGCAGTGGTGAACTCGCTGTTGATGACGTTATCGTTGAGatcAACGGACAGTTTGTGCTCAATTCTCCGCTTGAGCCCGTGATCGCTGCAATGCAGGAATGTAACACTGTATTTATGGTGGTGGCGAGGGCGAAAAATACCGAACCGGAAgaagAAAACAAACCGGATTATAGGGACGATCTCAAGGAGTTAACTCTTCAGATACAAAATCTTGTCACCAAAGTCAGCGAGATGCAAAGCGACTTGAAGAAGAAAGATGATAAGATTAAAACTTTGAAGAAGATGGTCAAAAAGAACAGCAGTGACAGTAAAGGAAAAATTTATGAGTCTGTTCAAGTCCTTGTATAATAACGCTATATTAACAACTCTTTCAACAAGAAAATTCGCACATCGTGCCTGTATATGTGCTGGCAAGATGCTTTTCCCTTACGCATGCTCACAATATATGACAGAGACGCAAAAGGTAGCTGAACATTACGTTCCAGCAAGAACGCTAAAGTTTCTTGAACTGCACTTTTCTCCTTCGACAGACTAGTAATATATGAATATTACACAACTGTCAAATGATTGAGAAGGTGGAAATACGTGCCAGAGCCTCGATTCCAAAGGAACCCTTTCATCAATGACACAATACCATCAGGACTATAAAAATTCAACCAAAACATGTTTCTAACATCCTCAAGGAACTGCAACCACGCAtgtttgcaaaaaatatttaccattctcgtaaataaattaaaatgtaaaatgaattttaaattcattggGAAAGAATTTTTAAAGAGCACGTGTTTAGACTATCACGTGGATAATCTCTGTTAAGAAACAAAGTTAAAAAGCACATGTCGTGCTATCACTTTAGTAAGGTAGACGATAGATTTAAAACAAGTGCTTTTGTGCTAATAAACACAACAAATTATGAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007008 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21298 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0045742 all species →	Biological Process	positive regulation of epidermal growth factor receptor signaling pathway	Interproscan
GO:0045743 all species →	Biological Process	positive regulation of fibroblast growth factor receptor signaling pathway	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068752471.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.