Gene detail

Detailed information of XP_068752979.1 in Montipora capricornis

Genomic Location: chr6:44782724...44818355
NR annotation: XP_029201649.2, mediator of RNA polymerase II transcription subunit 16-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138050556

ATGGTAAATGACTGGGAATGCATTTGTACTGTTGATGTTGGTGAAGGAGAAAGATTGGTAGCAATCTCTTGGATTGATACTGGGATCAAGAACCTTTTTACCCTTCACGGCGATGATCCACAGCATTCAGTTATTCCCAAGAAGCTTGGAGAGCGCTTTAAGACCAATAAAAGCAAACATCCTTTGGTAGAGATTGAAGGGATGAGAGCCAAAGATGGATGGGTGGCCATCAGTGAAACAGGGCTTATTTGTGTGACAACCATAAAACCAGAAATACAAATAACGAGAAAATGCTTGGCAACAGTGCGTGCAAGAGTTGCTGTGGCTGATCTCGCATTTACAAACATGGGAAAAGTAATAGTTGTAGCAAATGATGGTGAATCATGCAGTGCTGTTCAGTTCTACAGAGTCTCCTTGTCTGGAATACCAGATGGCTGTCAGATTTTGTCAGATCCTCTTCCCTGCCTGTTTCCTCATTCGCACACTGAACAAGACTTTGCTGAATATCATGTAAATAATCTCCAATTTATGTCCAAGAACTCTGGTGAAGCAATTCTGGTGTGCACAACAGGCAAAAATGGAAGTTGTATAAAACGTTGGGAAATGAAGAAAGGAAAGGTGCAGGTTCATGAGAGATTCCAACAGGAAATAGCATCACATCTCCATCCGTACATGACGAACTACAGTGTATATGAATGGACCATCATCAAAACTTACAAAGATCCTGCCAACATCGTGTCCCTTTGTCTGCCAAGGCTACCGACACCCAAAGTGGACTTGTCACCGACCAGTAACCTGTTGACATATCCTGCATCAATACTTTTGGTACAATATGATGATGACAGACTTCAGTTATTAACTTGTTTAAAGCTGTTACGAAATGGTTCATTTTCCACAAAACTCCAAAGTTCAGTAGATGCAGAAATTGGTTCATTAGCTAAAAGGGCGTCCTCTTCAAGAGTGGGTTGTAGCCCAGGTTTGCTTGGTGCCATCTGTTATTCCCCTTGCTGCTGTTGTGTGGTAGGGGTGACCATGACAGGAGACCTGCGCATGTTCAAACTGCATCACCTTGCAGAATTTGGCGTAGATCATGCCGCATTATGGCTTAAAATCAGTTTGAAAGACCTGTTGCTGTATTGTCTACTGTCTGGCTGGGAATGGTGGGATGTACTCATGGCTGCTCATCTTGGAACACCTGCAGACACCTTAGATGCAGTGTTAAGGCTGTTAACAGATGACTTCAACAAGCAGGACATTTCCCAACAGCAGATTCAAGGTTCCAGATTCAGAGCAATTCAAGCCAGTCTGTTAAGGTGCATGAAAGATGGCGCTGGGCAGGCAGTTGACTGCTATGTTCATCAACTTCTCATGGCGGTAGCAGCAACCTTTAGGTCTCTTTTGAGATCCACACACAATGCCTCTGATCAGCTGGCAAAGATACCCACAGCTGTGGATGTTGATGTAGACAAAGTACTGCAAGCTCTAGATACAAAGGAATTGACTCTTCAAAGCACAACATTGTTGTCTTTGTTTCCTCTCATTCAATGGTTGGCTGACCTTGCCATGTTTGTGGTTAACGTTGTTTCCTTCACCTCACATCACAACAAGGAATCGGCACCAGGGGTTAGCCTGATGCGTGACACAAGCTTTCTAGGTACATTGCGTGAAATGCTTATTCTCATTCGACTCTGGGGTCAGACCACACCTGGAATACTCCCCTCTATTACTCCTTCGGCAGATAAAAATGAGTCATTGGCACTGTTATTTAAGATCTTTACCAAAATCTGGCTTCTAAGCAGACAAGCTAATACAGATGAACCTGATGTTGCTGTAGAAGACAGGTTGGCTGCTGAAGCAGCTCCTCTAACTCCAAATTTTTCATCTTTCCTTCAAAATATACAAGTGCCCAGTTTAAGCAGAGGTGTGTCTGGCAAAGCTGTGACTGGACAAATCAAAACAGGCCTTTATCAGTTTGGTATCCAACCAGTGTTGCAGACAACACATCAGGTCTTCCATCCATCATCCTCTGCCATCTTCCCCATGCCTGCTGATGGAATACATACTATGGATGTTGTGAGAAGGATCTTTCTGGACAAATCTCCCACCACCAAGTTAAAACAGTGCACTCGGTAG

Transcript

rna-XM_068896878.1

CACATGGTAAATGACTGGGAATGCATTTGTACTGTTGATGTTGGTGAAGGAGAAAGATTGGTAGCAATCTCTTGGATTGATACTGGGATCAAGAACCTTTTTACCCTTCACGGCGATGATCCACAGCATTCAGTTATTCCCAAGAAGCTTGGAGAGCGCTTTAAGACCAATAAAAGCAAACATCCTTTGGTAGAGATTGAAGGGATGAGAGCCAAAGATGGATGGGTGGCCATCAGTGAAACAGGGCTTATTTGTGTGACAACCATAAAACCAGAAATACAAATAACGAGAAAATGCTTGGCAACAGTGCGTGCAAGAGTTGCTGTGGCTGATCTCGCATTTACAAACATGGGAAAAGTAATAGTTGTAGCAAATGATGGTGAATCATGCAGTGCTGTTCAGTTCTACAGAGTCTCCTTGTCTGGAATACCAGATGGCTGTCAGATTTTGTCAGATCCTCTTCCCTGCCTGTTTCCTCATTCGCACACTGAACAAGACTTTGCTGAATATCATGTAAATAATCTccaatttatgtccaagaactCTGGTGAAGCAATTCTGGTGTGCACAACAGGCAAAAATGGAAGTTGTATAAAACGTTGGGAAATGAAGAAAGGAAAGGTGCAGGTTCATGAGAGATTCCAACAGGAAATAGCATCACATCTCCATCCGTACATGACGAACTACAGTGTATATGAATGGACCATCATCAAAACTTACAAAGATCCTGCCAACATCGTGTCCCTTTGTCTGCCAAGGCTACCGACACCCAAAGTGGACTTGTCACCGACCAGTAACCTGTTGACATATCCTGCATCAATACTTTTGGTACAATATGATGATGACAGACTTCAGTTATTAACTTGTTTAAAGCTGTTACGAAATGGTTCATTTTCCACAAAACTCCAAAGTTCAGTAGATGCAGAAATTGGTTCATTAGCTAAAAGGGCGTCCTCTTCAAGAGTGGGTTGTAGCCCAGGTTTGCTTGGTGCCATCTGTTATTCCCCTTGCTGCTGTTGTGTGGTAGGGGTGACCATGACAGGAGACCTGCGCATGTTCAAACTGCATCACCTTGCAGAATTTGGCGTAGATCATGCCGCATTATGGCTTAAAATCAGTTTGAAAGACCTGTTGCTGTATTGTCTACTGTCTGGCTGGGAATGGTGGGATGTACTCATGGCTGCTCATCTTGGAACACCTGCAGACACCTTAGATGCAGTGTTAAGGCTGTTAACAGATGACTTCAACAAGCAGGACATTTCCCAACAGCAGATTCAAGGTTCCAGATTCAGAGCAATTCAAGCCAGTCTGTTAAGGTGCATGAAAGATGGCGCTGGGCAGGCAGTTGACTGCTATGTTCATCAACTTCTCATGGCGGTAGCAGCAACCTTTAGGTCTCTTTTGAGATCCACACACAATGCCTCTGATCAGCTGGCAAAGATACCCACAGCTGTGGATGTTGATGTAGACAAAGTACTGCAAGCTCTAGATACAAAGGAATTGACTCTTCAAAGCACAACATTGTTGTCTTTGTTTCCTCTCATTCAATGGTTGGCTGACCTTGCCATGTTTGTGGTTAACGTTGTTTCCTTCACCTCACATCACAACAAGGAATCGGCACCAGGGGTTAGCCTGATGCGTGACACAAGCTTTCTAGGTACATTGCGTGAAATGCTTATTCTCATTCGACTCTGGGGTCAGACCACACCTGGAATACTCCCCTCTATTACTCCTTCGGCAGATAAAAATGAGTCATTGGCACTGTTATTTAAGATCTTTACCAAAATCTGGCTTCTAAGCAGACAAGCTAATACAGATGAACCTGATGTTGCTGTAGAAGACAGGTTGGCTGCTGAAGCAGCTCCTCTAACTCCAAATTTTTCATCTTTCCTTCAAAATATACAAGTGCCCAGTTTAAGCAGAGGTGTGTCTGGCAAAGCTGTGACTGGACAAATCAAAACAGGCCTTTATCAGTTTGGTATCCAACCAGTGTTGCAGACAACACATCAGGTCTTCCATCCATCATCCTCTGCCATCTTCCCCATGCCTGCTGATGGAATACATACTATGGATGTTGTGAGAAGGATCTTTCTGGACAAATCTCCCACCACCAAGTTAAAACAGTGCACTCGGTAGAGAGCTGTGATAATAGTTAAACTAAGTATtagttatacatgtatgtgttggATCACACGCATTCCGTGCTTAATGGTTAACTTCATTATGGCCCTCGTTGTTAAAAGAATTAGGTTTGTGTAGAATTCATACAGACCAATATCAAGACGTAAAAATAGGTAGAAATGGTGACACCTTCCTTGTCCGTGTATATATAGCCTGTGTGCAGCCGCGCACTCtcccacttatgtccaggtttgaccctaattagatgcacgcccaattttgacatccaacacaaagtgttccggaataattttgcatacattattaggtgatctacgctgaccattgcgtggctcatatttctttggagctaaattctcaaaatggtgttcaatgaggtagatttcaagCGTGGATTGAAGAGCGTCTctgatagttttaagataccttggctttataggatagaagcactctttaaaggaaaggatgtatttgcaagtcttccaaccgggtacggctctgatcttcagagcagcacagatcgttgccgatgatCTGTTATTTTCCTCATCTCAAATCTTCAGGGcaacacgctttgtagattgttcttgagaatggctaggctggtccgagcaaggcgttgggattacattgactggtaagggatagcgggagacgttttcgagtggacaatctcTTGAATAGTGCAATAtatatattcacctcgtgaagattcgtcaggagcgctttcgtttctttagcgctgacaacaattcctacaaatgtacgtagaatcgatttccactttacactccatagctaacaattccgctcgtgcTTTAAAAGGAAAACCTCTTTGACCATCAAAGAGATTTTTATTCGTAATTTTTACCGTGCGCAAAGTACACACGAATTCATCGTAAAATTtctcacggtggttctcacagtgttgatgtggagaaataaaagtaaaagcCAGTCAAAACgtgttgtttcaatgatgtaacatgatcgatgggtaataaccagtcacatcattttccacacattccagggaaaatcacgtggtattgaacacgattatcaacggtaaatcaaagACGaatcctctccgatttttttttttttacagagagtgggcggctgtacactAGCTATATATGCATAGATGTTTTGAGTTTTATGTGGCTGTTAGGGGAAGCTTGCAGTGCAAAAGAAGAAGTTCCACAGTTAcagaaaacctcaaatttacaGCAGACTGCCATTGAGAATGTAATGCAATCCCTGCCCAAGAGCGattgctgtttctttgttttcccaCGCCAAAGAAGTCAGGGAAAATTTTTGTGAAGCCCCAAGATCATTGCAATGGTCTTCATTGGTGATTATTCCTGATGCAAAAAGTGACCTGCCTTTATGGTGTAACCACGGTCAGCTTTTAAATTTGCGCCCCATGTATGTTATTTCTAGAAACCTGGAAGTGTTGACAGAGTTCATGCATTTATGATTTCAAGGATAAAGAATGGCCTGAACGGACtatagtagtataggagttgggggtacgagagcatttttgcaaaaatgctctcataccaacccaactccatactactttacaTTTAATGGCTTCCATCGATGGTTTCCATCACATGGGTGTGGTCGCATGGGCGTGGTCATTTTCGGTCTCGtattcttggaaatctatatgttttatatttctgcgaatctatgccgtggcgaggcagaatggatccaacgcaaaatttattttggaactatatgtttttaaaaaacctaaaataatatctcatataatagtataatgagttgCGAAGAACTGCATAAAGAACTTGTCAATATGGAAGAAGTGGTCTGTCCATTTTGCAATAAACAGATAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PGF3	Mediator of RNA polymerase II transcription subunit 16 OS=Mus musculus OX=10090 GN=Med16 PE=1 SV=2
Q9Y2X0	Mediator of RNA polymerase II transcription subunit 16 OS=Homo sapiens OX=9606 GN=MED16 PE=1 SV=2
Q08D69	Mediator of RNA polymerase II transcription subunit 16 OS=Xenopus tropicalis OX=8364 GN=med16 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004885 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20718 all species →	Med16_bridge	Mediator complex subunit 16, central helical bridge	Domain	Interproscan
PF11635 all species →	Med16_N	Mediator complex subunit 16, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048616 all species →	Domain	Mediator of RNA polymerase II transcription subunit 16 , central helical bridge	Interproscan
IPR021665 all species →	Domain	Mediator complex, subunit Med16, N-terminal	Interproscan
IPR048338 all species →	Family	Mediator complex, subunit Med16	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13224 all species →	THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068752979.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068752979.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

6.3Max TPM

1.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	1.49	6.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	6.34
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	3.77
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	3.67
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	3.27
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	3.25
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	2.97
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	2.83
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	2.81
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	2.80
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	2.56
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	2.56
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	2.35
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	2.22
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	2.21
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	1.98
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	1.40
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	1.20
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	1.03
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.68
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.62
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.61
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	0.61
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	0.51
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.40
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.38
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.33
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.29
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.