Gene detail

Detailed information of XP_068753203.1 in Montipora capricornis

Genomic Location: chr6:71340092...71341442
NR annotation: XP_029184399.1, pituitary-specific positive transcription factor 1-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10036	Pituitary-specific positive transcription factor 1 OS=Bos taurus OX=9913 GN=POU1F1 PE=2 SV=1
P28069	Pituitary-specific positive transcription factor 1 OS=Homo sapiens OX=9606 GN=POU1F1 PE=1 SV=1
Q28503	Pituitary-specific positive transcription factor 1 OS=Macaca mulatta OX=9544 GN=POU1F1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001851 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00157 all species →	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR000327 all species →	Domain	POU-specific domain	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR050255 all species →	Family	POU domain transcription factor	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR013847 all species →	Domain	POU domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11636 all species →	POU DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09363	POU1F, PIT1; POU domain transcription factor, class 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068753203.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

24.5Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	3.32	24.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	24.49
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	23.75
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	4.94
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.47
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	4.23
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	4.22
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.18
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	4.02
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	3.79
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	3.70
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	3.67
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	3.66
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	3.39
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	3.22
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	3.15
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	2.59
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	2.46
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	1.94
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.73
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.70
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	1.62
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.52
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	1.42
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	1.24
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.21
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.12
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.03
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.92
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.