Gene detail

Detailed information of XP_068753472.1 in Montipora capricornis

Genomic Location: chr6:3398665...3403717
NR annotation: XP_029203361.2, urease accessory protein D-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9GP79	Urease accessory protein UreD OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=ureD PE=3 SV=2
P87125	Uncharacterized urease accessory protein ureD-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC3A12.09c PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01774 all species →	UreD	UreD urease accessory protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002669 all species →	Family	Urease accessory protein UreD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33643 all species →	UREASE ACCESSORY PROTEIN D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0016151 all species →	Molecular Function	nickel cation binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068753472.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068753472.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

117.6Max TPM

35.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	35.90	117.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	117.59
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	61.33
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	60.36
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	59.20
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	53.74
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	53.00
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	50.36
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	49.87
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	49.56
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	48.05
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	47.87
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	43.98
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	43.43
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	42.33
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	42.04
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	40.93
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	38.40
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	37.92
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	36.89
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	36.68
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	35.67
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	35.12
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	34.41
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	34.37
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	32.72
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	32.26
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	25.33
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	25.07
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	23.93
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.