Gene detail

Detailed information of XP_068753806.1 in Montipora capricornis

Genomic Location: chr6:10271408...10296470
NR annotation: XP_044167629.1, msx2-interacting protein-like isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138051495

ATGGTGCGAGAAACCCGACATTTGTGGGTTGGAAACCTGCCGGAAAACATCAGGGACGAAGAAATTGTTAAGCACTTCACCCGGTATGGGCGAGTTGAAAGCGTTAAAATTTTGCCAAAACGCAGCGCCGAAGGCGGAAGAGCCGCATTTGTTGATTTTGTTGACATTCGTAGCGCCACTAAGGCTCACGAATCTGTAAATCGAATCGGTGATCGGGAAATGAGGACGGACTACAATGAACCGGGGAACCCCGGAACCCTATCCCGGCTTCATGGTCATACAGATCCCCCAGCACGGCCAAGAAGAACCGAGGGTGCCCCAGAAGGAAGGTATAGTGGAGCCAGGTCACAAAATTACTATGAAGGTTTCAGTGATGATGAGTCAGCTGCTGGTAGTCGCATGCCAAGTGGACTCGGGGGTTCAAGTGGAGGAAGCAGTTCCAACAGATCAAGAGCTGTGAGTGGAAACACCAGAGATCATCGTAGGCAGCAGACCTACAATCAAGAACCTACAAGAAGAAGCTCAAACAAACCCAAGGCATATCGTGACCAAGAACCCAGCCCAGATCATTCCAGTGGCAGTGAGAGTGGTAGCGAAAGCAGCCATAGTGGGAGTCAGTCACCCAGCACTAGTGGTAGCAGCAGCAGCGAAGAGGGCAGCAGAGATGGCAGTGTGCCTGTGGCTGCACCGCCGGCACCCGTGGAGCCACCTCAGAATACAAACAGAAGTTCGGCTCTGTGTTTGAGAAATATTATGGCAAGATCGGGAGACAGTAGTGTTCGGGATGGTCTTTACCATGAGTTCAAGAAATATGGAGATGTTGTGCGCATTTATGTCAATGGACAGGGATCCAGTAGATATGCTATTATTCACTTTAGAAGACCTGAAGATGCTGAACGAGGAATTGAAGCGTGTCGTGGCAAGATGTTCCTTGGAGCTGAAATGGACCTGCAATACTGGAGAGATGATCGTTATGAGGCTGGTGATCACCCTCCACGACATCGTTCACATGTTGGTGCTTTAATGGATGACGAGTTTGATCCAGGCTGCACCAGGACTCTCTTTGTGGGAAATATCGAAAAGACGACGACTTTTGCTGATCTCAAAGACGCATTTGAGCGATATGGAGAAATTGTGGATGTTGACATAAAAAAACAGGTCGGTAACAATCCATACGCCTTCATCCAGTTTGTGGAGCTTAGCAGTGCCATCCAGGCTCGAAGAAGAATGGACAGAGAGTTTGTTGGACGAAACCGAGTCAAGGTTGGTTTTGGCAAGGTATCTCCCATCAATACCATCTGGGTTGGAGGCTTGGGAGGGCTGAACGAACAACAAGTGGACAGGCACTTTGGACGATACGGCCGTGTCACAAAGGTGGTGATGAACCGAACCAAAGAACAAGCCCTTGTCAGCTTTGACAGTGTCGAGTCTGCAAGCATTGCTCAAGGTGAAATGAAGGGAAGGTCAATGTTTGGACGACGCGTTAGGGTTGAATTTGTCAGCCGTGACAGTCGTCAGCTCTTTTACGATGCATTACAGCGACCCGTTCCCTCTGATAACAACAGCAGGAGATATGAGCCTTCCTCTCCGAGGTCCCGAGGGCGAGGAGGTTCCTCCGGGTATTACGAAAACCGGTGGGATAGGAGCCGCGGGGGTCGTGGCAATATGCGACGAGATGTGTCAAATCACCGACCGTGGCATAGAGGCGAGTATGAGTATCCAGAAGGCAGTGGCTACCACCAAAGAGGACATGCGCGCTACCGTGGACCCTACGAAGGGGCTGGATACGATTCTGATGATTATGATCAAGAACTGCGCGATTACAACTACAGTCGACAGAGAGAGAGGGAAAAGGAACAAGGACGGCAGAGACATGAACGTGGTGGTCGCGAGCGAGAGAGAGAGGAGGGAAATTATAGCGGAAATGAACGATTTTATCCTGAAAACCAAGACCGCTGGCGCGATGAACGAAGTAGCTCGGGCTCGTACGAGGATCCACGCGAACGCAAAGACACCCGTCCCAGGGAATTCTTGGATGGACATGACCGAGAGCGTGGAGGTTATAGTGAGAACGAAGAACGAGCTTCAGTGCATGGCAAGCCATCGAGTCATGATTTTGAGCAGGACGAGAAACGAAGCAAGATAAAGGAGAGAAAGAAAAGAAAACCCAGGTCCCCAACTCCCGAAGGTGAACCACCTGAGGAGAAGGTAGCGTTGAGTACACTGGAAGCTGCTTCAGAGGAGAAATCAGCGGGTGAGGGTAAGGAGAAGAAAGCTAGAGCTGAAGATGGGGAGATCACCGAGAAAGGTAAAAGCGGCGGAGAGCGAGACTGGCACGAAGCGCGCGCTCAAGGAAATGGCTCTAGGAATGAGAGAGATCAGCCAAACAAGGAAGGCAGCGATAAAGTACCGATTCCTGCATCACCGCCACCGCCGGTTGAGAAGGGCGTCAAACGGAAGGATAAGAAAGAGAAACGGAAGAAACACAAGCGCATCCGAGCGTCTCTTGGCGAGGAAGAAGAAGAAAGAGAACAAGAGCAAGAAGCTGCGCGCTTGGAGGAATCCGCCATCCAAGCGGCAACTGATTCGGCCTCATTATCCGCTAATATGCAGAGAGCGAGTGTCGACGCTGATTTACAGAGACTAGACAACAGAGATATACATTCCGCACCTGAGAACAATAGATTCGATCGCGATGAATTTGAAGAGAAACCACCAAGGCGGCATTCTGCGGACGATAGGCTGCCGAAGGAAGATAGAGAATTGTCACGAGAGACGGGTAGTCCTTCACCGCGCAATAAACCGCACAGAGACGAACGGAGAAGGGATTGGGAAAACCAGGAAAGTGCGAGACCGAAACGACGCCGTTTGTCGAATGGTGAATCCCCACCCCCTCCCCCACCGCCTCCGCCCCCGCCCCGAGAGGCTGGGGAGGCATTGCCGGCGCACGTGGATGTGGTACCGAGAGCAACACAACCCGCACCGGACGGAATCACGACACAAGTACACCGTCCTTCTTATGATGTCGCTCAAGCACCTGTACGTTATGAGTCCCAGCTGTATGATACGAATCGAGCCGTGTCCGTGGGGCTTTCTCCTGTGGGTATCCCCATCAACCCTGCTGGCGTTGCCCCACCAAATGTGGGGACTCCACCGTTAGCAGTTCACTCTCCCGGAATTGCCATTGGCGTGCCTTCGGCGCCTGCATTGGCATCCCCTTCGGGGATGGTACCTCCCCCTCCACCACCGCACTCTGATTACAGCACCGCGCCTTCCGTTCCACAGCAGGCAAACCCTGATACTCTCCTGGATCTTTTGCGGCGGTATCCCGTGGTTTGGCAGGGGCTCTTAGCATTGAAGAATGATTCAGCAGCAGTGCAGATGCACTACCTTGCTGGTAACGGTGGCTTAGCGGAGGTGTCGCTGCCTCAGACACCCACAAATGGAGTCGGAGGAAGTGTGCCCCCACCCATCAGAATAGCGCAGAGGATGAGGTTGGAGCCTTCGCAGCTGGAGGGAGTCATACGGAGAATGCAGTCTGACAACGATCATTGTCTGCTTCTGGCACTGCCGTGTGGCCGCGATCCGCTGGATGTACACAAACAAACGAGGGCTTTGAAAAGTGGTTTCATAAACTATTTACAACAAAAACAGGCCGCGGGCATAATCAACGTTGCAAGACCGGGAAGCACTCAGCCGAGTTATGTACTTCACATTTTTCCGCCGTGTGATTTCGCCCAGGAGCACTTGGCCCGAGTTTCCCCAGACCTCCTTGACAGCGCAGCTGACAGCGGTCATCTTATGGTCGTGGTAGCATCCGTGTAG

Transcript

rna-XM_068897705.1

ATTGCAACGATAGTAGGAACTTCATCGCGGCTTTCATCGCGAATCGAAAGTTGCAGGGAAATGAACTTTTCACTTCTGCGTTAACCGTGAAACGgatctgaaaaattaatttaagccACAGGAAAAGTTTCTAACACAATGGTGCGAGAAACCCGACATTTGTGGGTTGGAAACCTGCCGGAAAACATCAGGGACGAAGAAATTGTTAAGCACTTCACCCGGTATGGGCGAGTTGAAAGcgttaaaattttgccaaaacgCAGCGCCGAAGGCGGAAGAGCCGCATTTGTTGATTTTGTTGACATTCGTAGCGCCACTAAGGCTCACGAATCTGTAAATCGAATCGGTGATCGGGAAATGAGGACGGACTACAATGAACCGGGGAACCCCGGAACCCTATCCCGGCTTCATGGTCATACAGATCCCCCAGCACGGCCAAGAAGAACCGAGGGTGCCCCAGAAGGAAGGTATAGTGGAGCCAGGTCACAAAATTACTATGAAGGTTTCAGTGATGATGAGTCAGCTGCTGGTAGTCGCATGCCAAGTGGACTCGGGGGTTCAAGTGGAGGAAGCAGTTCCAACAGATCAAGAGCTGTGAGTGGAAACACCAGAGATCATCGTAGGCAGCAGACCTACAATCAAGAACCTACAAGAAGAAGCTCAAACAAACCCAAGGCATATCGTGACCAAGAACCCAGCCCAGATCATTCCAGTGGCAGTGAGAGTGGTAGCGAAAGCAGCCATAGTGGGAGTCAGTCACCCAGCACTAGTGGTAGCAGCAGCAGCGAAGAGGGCAGCAGAGATGGCAGTGTGCCTGTGGCTGCACCGCCGGCACCCGTGGAGCCACCTCAGAATACAAACAGAAGTTCGGCTCTGTGTTTGAGAAATATTATGGCAAGATCGGGAGACAGTAGTGTTCGGGATGGTCTTTACCATGAGTTCAAGAAATATGGAGATGTTGTGCGCATTTATGTCAATGGACAGGGATCCAGTAGATATGCTATTATTCACTTTAGAAGACCTGAAGATGCTGAACGAGGAATTGAAGCGTGTCGTGGCAAGATGTTCCTTGGAGCTGAAATGGACCTGCAATACTGGAGAGATGATCGTTATGAGGCTGGTGATCACCCTCCACGACATCGTTCACATGTTGGTGCTTTAATGGATGACGAGTTTGATCCAGGCTGCACCAGGACTCTCTTTGTGGGAAATATCGAAAAGACGACGACTTTTGCTGATCTCAAAGACGCATTTGAGCGATATGGAGAAATTGTGGATGTTGACATAAAAAAACAGGTCGGTAACAATCCATACGCCTTCATCCAGTTTGTGGAGCTTAGCAGTGCCATCCAGGCTCGAAGAAGAATGGACAGAGAGTTTGTTGGACGAAACCGAGTCAAGGTTGGTTTTGGCAAGGTATCTCCCATCAATACCATCTGGGTTGGAGGCTTGGGAGGGCTGAACGAACAACAAGTGGACAGGCACTTTGGACGATACGGCCGTGTCACAAAGGTGGTGATGAACCGAACCAAAGAACAAGCCCTTGTCAGCTTTGACAGTGTCGAGTCTGCAAGCATTGCTCAAGGTGAAATGAAGGGAAGGTCAATGTTTGGACGACGCGTTAGGgttGAATTTGTCAGCCGTGACAGTCGTCAGCTCTTTTACGATGCATTACAGCGACCCGTTCCCTCTGATAACAACAGCAGGAGATATGAGCCTTCCTCTCCGAGGTCCCGAGGGCGAGGAGGTTCCTCCGGGTATTACGAAAACCGGTGGGATAGGAGCCGCGGGGGTCGTGGCAATATGCGACGAGATGTGTCAAATCACCGACCGTGGCATAGAGGCGAGTATGAGTATCCAGAAGGCAGTGGCTACCACCAAAGAGGACATGCGCGCTACCGTGGACCCTACGAAGGGGCTGGATACGATTCTGATGATTATGATCAAGAACTGCGCGATTACAACTACAGTCGACAGAGAGAGAGGGAAAAGGAACAAGGACGGCAGAGACATGAACGTGGTGGTCGCGAGCGAGAGAGAGAGGAGGGAAATTATAGCGGAAATGAACGATTTTATCCTGAAAACCAAGACCGCTGGCGCGATGAACGAAGTAGCTCGGGCTCGTACGAGGATCCACGCGAACGCAAAGACACCCGTCCCAGGGAATTCTTGGATGGACATGACCGAGAGCGTGGAGGTTATAGTGAGAACGAAGAACGAGCTTCAGTGCATGGCAAGCCATCGAGTCATGATTTTGAGCAGGACGAGAAACGAAGCAAGATAAAggagagaaagaaaagaaaacccaGGTCCCCAACTCCCGAAGGTGAACCACCTGAGGAGAAGGTAGCGTTGAGTACACTGGAAGCTGCTTCAGAGGAGAAATCAGCGGGTGAGGGTAAGGAGAAGAAAGCTAGAGCTGAAGATGGGGAGATCACCGAGAAAGGTAAAAGCGGCGGAGAGCGAGACTGGCACGAAGCGCGCGCTCAAGGAAATGGCTCTAGGAATGAGAGAGATCAGCCAAACAAGGAAGGCAGCGATAAAGTACCGATTCCTGCATCACCGCCACCGCCGGTTGAGAAGGGCGTCAAACGGAAGGATAAGAAAGAGAAACGGAAGAAACACAAGCGCATCCGAGCGTCTCTTGgcgaggaagaagaagaaagagaacaagAGCAAGAAGCTGCGCGCTTGGAGGAATCCGCCATCCAAGCGGCAACTGATTCGGCCTCATTATCCGCTAATATGCAGAGAGCGAGTGTCGACGCTGATTTACAGAGACTAGACAACAGAGATATACATTCCGCACCTGAGAACAATAGATTCGATCGCGATGAATTTGAAGAGAAACCACCAAGGCGGCATTCTGCGGACGATAGGCTGCCGAAGGAAGATAGAGAATTGTCACGAGAGACGGGTAGTCCTTCACCGCGCAATAAACCGCACAGAGACGAACGGAGAAGGGATTGGGAAAACCAGGAAAGTGCGAGACCGAAACGACGCCGTTTGTCGAATGGTGaatccccaccccctcccccaccgCCTCCGCCCCCGCCCCGAGAGGCTGGGGAGGCATTGCCGGCGCACGTGGATGTGGTACCGAGAGCAACACAACCCGCACCGGACGGAATCACGACACAAGTACACCGTCCTTCTTATGATGTCGCTCAAGCACCTGTACGTTATGAGTCCCAGCTGTATGATACGAATCGAGCCGTGTCCGTGGGGCTTTCTCCTGTGGGTATCCCCATCAACCCTGCTGGCGTTGCCCCACCAAATGTGGGGACTCCACCGTTAGCAGTTCACTCTCCCGGAATTGCCATTGGCGTGCCTTCGGCGCCTGCATTGGCATCCCCTTCGGGGATGGTACCTCCCCCTCCACCACCGCACTCTGATTACAGCACCGCGCCTTCCGTTCCACAGCAGGCAAACCCTGATACTCTCCTGGATCTTTTGCGGCGGTATCCCGTGGTTTGGCAGGGGCTCTTAGCATTGAAGAATGATTCAGCAGCAGTGCAGATGCACTACCTTGCTGGTAACGGTGGCTTAGCGGAGGTGTCGCTGCCTCAGACACCCACAAATGGAGTCGGAGGAAGTGTGCCCCCACCCATCAGAATAGCGCAGAGGATGAGGTTGGAGCCTTCGCAGCTGGAGGGAGTCATACGGAGAATGCAGTCTGACAACGATCATTGTCTGCTTCTGGCACTGCCGTGTGGCCGCGATCCGCTGGATGTACACAAACAAACGAGGGCTTTGAAAAGTGGTTTCATAAActatttacaacaaaaacagGCCGCGGGCATAATCAACGTTGCAAGACCGGGAAGCACTCAGcCGAGTTATGTACTTCACATTTTTCCGCCGTGTGATTTCGCCCAGGAGCACTTGGCCCGAGTTTCCCCAGACCTCCTTGACAGCGCAGCTGACAGCGGTCATCTTATGGTCGTGGTAGCATCCGTGTAGACAAAACCTAGTCATGTTAACAAATATGAAGTAGGAATATGAAATCAAGGACGTCACGACCAAGGCGTATTCCAAGTGGTGCCTTTTGGTGAGCAAGGTGTAAGTTGGAAATTCACTCAGAGGTGAACTTTGGGTGGCGCTGAAAAGACACTAGTTCCTGCAAACAGTTTCTAAGACCAACAGTGTTCAGAAACAAGGCATTAATACAAAAGTGTATTTGGGGAGCTAACAATAGAACTGTTGGGAGTTTCGTGCATGACCCCCCGAGATTTTGTGAATTTTCAAGCATTTTGTTTTAAGCCGGGATGCAACTTTTTTCCCATCGAGAACAATCATcaagttttaattattttgaaaatgtgtttcaaGGATTGGTGTAGTGAAATTTACGTGAATATTTTATTAGACACAGTTCAAGTGTGTGCTGTTAATTTTATGTATAGATGATAAATAGATGAGGACTGCAGAGCTCTCAGATGAGTAGTCACTAAAGGGAAATATAGCACTGGCTAACAGGGTTTTTAAAATACAGAATTTATCCAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96T58	Msx2-interacting protein OS=Homo sapiens OX=9606 GN=SPEN PE=1 SV=1
Q62504	Msx2-interacting protein OS=Mus musculus OX=10090 GN=Spen PE=1 SV=2
Q8SX83	Protein split ends OS=Drosophila melanogaster OX=7227 GN=spen PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002806 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07744 all species →	SPOC	SPOC domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR010912 all species →	Domain	Spen paralogue/orthologue C-terminal, metazoa	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012921 all species →	Domain	Spen paralogue and orthologue SPOC, C-terminal	Interproscan
IPR034172 all species →	Domain	SHARP, RNA recognition motif 1	Interproscan
IPR016194 all species →	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR034174 all species →	Domain	SHARP, RNA recognition motif 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189 all species →	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068753806.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.