Gene detail

Detailed information of XP_068754082.1 in Montipora capricornis

Genomic Location: chr6:19221285...19224883
NR annotation: CAH3154002.1, unnamed protein product [Porites evermanni]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P83362	Signal peptidase complex subunit 1 OS=Canis lupus familiaris OX=9615 GN=SPCS1 PE=1 SV=2
Q3T134	Signal peptidase complex subunit 1 OS=Bos taurus OX=9913 GN=SPCS1 PE=3 SV=1
Q9Y6A9	Signal peptidase complex subunit 1 OS=Homo sapiens OX=9606 GN=SPCS1 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009095 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06645 all species →	SPC12	Microsomal signal peptidase 12 kDa subunit (SPC12)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009542 all species →	Family	Signal peptidase complex subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13202 all species →	MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005787 all species →	Cellular Component	signal peptidase complex	Interproscan
GO:0006465 all species →	Biological Process	signal peptide processing	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0045047 all species →	Biological Process	protein targeting to ER	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12946	SPCS1; signal peptidase complex subunit 1	EC:3.4.-.-	Protein export	ko03060	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068754082.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

375.5Max TPM

216.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	216.58	375.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	375.49
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	362.87
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	360.91
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	355.72
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	353.32
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	335.27
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	331.14
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	311.89
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	290.75
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	279.89
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	279.23
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	278.14
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	270.36
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	266.43
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	265.95
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	262.54
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	253.37
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	250.35
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	246.77
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	224.04
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	217.84
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	203.20
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	199.26
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	199.00
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	198.74
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	187.47
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	185.43
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	177.75
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	136.82
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	136.81
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.