Gene detail

Detailed information of XP_068754271.1 in Montipora capricornis

Genomic Location: chr6:27053060...27088233
NR annotation: XP_044169196.1, 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2-like isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138051877

ATGACAGAGCAAGGCCCCGACATCCTCAGCCACGAGACGAAAATCGCAAAAAGTTCTATAGACCAGTGGAGGAAATATAAACATCGAAGATCAGCTAAATGTGCCGACAATCACAAATTTGCCAACGTTGGAGAATCAATAGATGTCATGCATAAGGGCACTGTAATCACAAAATTGCGAAGCTCCTCGAAGAAATATCCCCGAAAATATTTTCTTGATCAACAAGCCGCGAATATCTGCTGGATTCCTTCCAAGAAGGGTGTTAGAGCCAAGATTCCAATAGCGTCAATCAAAGAAGTGCGAGAGGGATCCGCTACTGATGCTTTCACTCAATGCCCAGAGATATATGTAGAAAGCAAGTGTTTCTCGATCATCCACGGAGAACATTTTACTACCCTGGACTTGGTCTTCCCGACTCATGAGGAGTTCCTTCATTGGACCGTAGGACTTCGATACTTGTTGGCAAAGAAGTTAGCTGAGGATGAGCCACTCCGACGTCAGACTTCAAGGGATCAATGGTTGAAAGAAATCTTTCTTTCGGCCGACAAAAGCGGAGATGGGTTGCTCAGTGTGGATGAAGTTTTTGCTTTGATGCATAAGCTAAACGTGAAAATATCAAACAGAAAACTGCGAGAGGCTTTTAAGGCAGCTGATACTGAGAATCAGGACTCGGATGGTCTCTTGGATTTCAACGAGTTCATCAATTTTTACAAGAGTATCTCTACAAGAAGAGAAATCTATCTTCTTCTTCTGAAGTACGGCAATAGTAAAGAGCACATGACCGTAGATGAACTCAAACTATTTTTAGAAACGGAACAGAAGATGACTGACGTCACCCCGGAATATTGCTGTCAACTCATTCAAACATACGAGCCTGTTGAGAAACACAGAAAAGCTAGTATTCTGGGGATTGATGGATTCACTGGATATCTTCTGGGTCCAGAGGGTGATATTTTCAATACAGAGCATTGCAAAGTCAACCAGGATATGACCAAACCACTGTCACACTATTTTATCGCCTCCTCGCATAACACGTACTTAGTTGGCGATCAGCTCACCTCCAATTCCAGCATGGATATGTACGTCAGAGTCCTCCAGGCAGGATGTCGTTGCATTGAACTTGACTGCTGGGATGGAAAGGACGGTGAGCCTGTGATATACCATGGTTATACGATGACGTCGAAAGTCAAATTCCGTTACGTCATTCTCAATATTAATGATTTTGCCTTTCTTCACAACAAATACCCAGTTATTCTTTCCTTAGAGAATCACTGTAGCGTCAGTCAACAGAAAGTCATGGCAAAAATCATGCGGGAAATTTTTAAAGACAAGTTAGTCTATGAAGCAACCTTTGATGGTACAGAATTGCCTTCCCCACAAAGCCTGATGGGAAAAATCCTTATCAAGGCCAAAACGCTACCCAAAAGTCTTGGCGAGGATTTAGATGAAGGGGAAGTCACCGAGGAAGACTCTGCTGACGAGATGGAGGAGTGCTTTAAGTTAAAGAACTTAGAGAACGTAACAGAGAAAAAAGCAAGGGAAAGAAAATGGCGTCGAACATTGTCGTCCTTGCAGCGAATTCGTTTAAACAGAGACGACGAGGAAAACGACGCTCGTGGTGACTTAAGTTCGTCAGTGGTTGCCTCGGTTGCAATGGAACAAACCGATGACGTCTCAAAACCAGCTCAGAGACAGAAATTCAGAAGAAAGAGCAAAAGAAAGCTCTCTAATAACGAGGTCGACGCTAGGAGAACAATCAAGCTTAGCAGGCAACTTTCTGATCTTGTGGCATATACTAGGTCATCTGCATTCAAAGGACTTGACATAAATGAAAATGAAACGCCTTGGGAGGTGACCTCTGTGCCTGAGTCAAAAGCATATAGATATGTGGATACTAAAGGCGAACAATTCGTGAGATATACGAGGTATAAACTGTGTCGAATATTCCCAGCAGGATATCGAATTGATTCAAGCAATCCGAATCCCCAGGCATTTTGGAACTGTGGCTGTCAGTTGGTCGCACTTAATTACCAATCAAATGGAAGGATGATGCAATTGTACAAAGGACGATTCAAGTCAAATGGAAATTGTGGTTACGTCTTAAAACCAGACGTTATGTGTAAAGATGAACCAAAGTTTGATCCTATGACAAGGAGAGAAATCGTCGGAGTCCAGAGAAAAGTCTGCAAAATCAGGGTCATCAGTGGACAGCAACTACCAAAGCCTAAAGATAGCATATTGGGAGACCGAGGAGAGATAATTGATCCCTACGTTGAAATAGAAGTCGTAGGTATCCCGGCTGACAGCGGCAAGCGACGCACCAAAACAGTTATAGATAATGGCTTTAATCCAACCTGGGAGGAGACGATCACCTTCATTCTAACATTTCCAAGTCTCGCAATTTTTCGCTTTGTTGTCTGGGACGAGGATCCCATTGGCCGAGACTTTATTGGTCAGGTTACTTTGCCATTCTCAAGCGTCATGCAAGGGTATAGGCATGTGCACCTTGACGGAAATCAACAGGCATCTATTTTTGTTCAAGTGAACATCACAGACTACCATGGTGAAAAGATAGTGGAAGGCTTGGAATTACTTAATCATGGAAGAAGACCTTCAGGAGGAATCAAGTTCAAAAAGAGACAGAGGAGCAATTCGTGGCTCATGTGA

Transcript

rna-XM_068898170.1

GGGTGTCTGCCAATAGCGTCAAGTTTTGTCCAATCGACTCATGAATTatgcagaaaaggaaaaaaaaaaaggtttctgtGACTTCCTTTGATGATAATTACGTTCACTGAACGTTAATTCTGAGGGTAATtttaaatgaaggaaacaaGTCGTTTGTTTGGGCTGTAGCGATGACAGAGCAAGGCCCCGACATCCTCAGCCACGAGACGAAAATCGCAAAAAGTTCTATAGACCAGTGGAGGAAATATAAACATCGAAGATCAGCTAAATGTGCCGACAATCACAAATTTGCCAACGTTGGAGAATCAATAGATGTCATGCATAAGGGCACTGTAATCACAAAATTGCGAAGCTCCTCGAAGAAATATCCCCGAAAATATTTTCTTGATCAACAAGCCGCGAATATCTGCTGGATTCCTTCCAAGAAGGGTGTTAGAGCCAAGATTCCAATAGCGTCAATCAAAGAAGTGCGAGAGGGATCCGCTACTGATGCTTTCACTCAATGCCCAGAGATATATGTAGAAAGCAAGTGTTTCTCGATCATCCACGGAGAACATTTTACTACCCTGGACTTGGTCTTCCCGACTCATGAGGAGTTCCTTCATTGGACCGTAGGACTTCGATACTTGTTGGCAAAGAAGTTAGCTGAGGATGAGCCACTCCGACGTCAGACTTCAAGGGATCAATGGTTGAAAGAAATCTTTCTTTCGGCCGACAAAAGCGGAGATGGGTTGCTCAGTGTGGATGAAGTTTTTGCTTTGATGCATAAGCTAAACGTGAAAATATCAAACAGAAAACTGCGAGAGGCTTTTAAGGCAGCTGATACTGAGAATCAGGACTCGGATGGTCTCTTGGATTTCAACGAGTTCATCAATTTTTACAAGAGTATCTCTACAAGAAGAGAAATCTATCTTCTTCTTCTGAAGTACGGCAATAGTAAAGAGCACATGACCGTAGATGAACTCAAACTATTTTTAGAAACGGAACAGAAGATGACTGACGTCACCCCGGAATATTGCTGTCAACTCATTCAAACATACGAGCCTGTTGAGAAACACAGAAAAGCTAGTATTCTGGGGATTGATGGATTCACTGGATATCTTCTGGGTCCAGAGGGTGATATTTTCAATACAGAGCATTGCAAAGTCAACCAGGATATGACCAAACCACTGTCACACTATTTTATCGCCTCCTCGCATAACACGTACTTAGTTGGCGATCAGCTCACCTCCAATTCCAGCATGGATATGTACGTCAGAGTCCTCCAGGCAGGATGTCGTTGCATTGAACTTGACTGCTGGGATGGAAAGGACGGTGAGCCTGTGATATACCATGGTTATACGATGACGTCGAAAGTCAAATTCCGTTACGTCATTCTCAATATTAATGATTTTGCCTTTCTTCACAACAAATACCCAGTTATTCTTTCCTTAGAGAATCACTGTAGCGTCAGTCAACAGAAAGTCATGGCAAAAATCATGCGGGAAATTTTTAAAGACAAGTTAGTCTATGAAGCAACCTTTGATGGTACAGAATTGCCTTCCCCACAAAGCCTGATGGGAAAAATCCTTATCAAGGCCAAAACGCTACCCAAAAGTCTTGGCGAGGATTTAGATGAAGGGGAAGTCACCGAGGAAGACTCTGCTGACGAGATGGAGGAGTGCTTTAAGTTAAAGAACTTAGAGaacgtaacagagaaaaaagcaaggGAAAGAAAATGGCGTCGAACATTGTCGTCCTTGCAGCGAATTCGTTTAAACAGAGACGACGAGGAAAACGACGCTCGTGGTGACTTAAGTTCGTCAGTGGTTGCCTCGGTTGCAATGGAACAAACCGATGACGTCTCAAAACCAGCTCAGAGACAGAAATTCAGAAGAAAGAGCAAAAGAAAGCTCTCTAATAACGAGGTCGACGCTAGGAGAACAATCAAGCTTAGCAGGCAACTTTCTGATCTTGTGGCATATACTAGGTCATCTGCATTCAAAGGACTTGACATAAATGAAAATGAAACGCCTTGGGAGGTGACCTCTGTGCCTGAGTCAAAAGCATATAGATATGTGGATACTAAAGGCGAACAATTCGTGAGATATACGAGGTATAAACTGTGTCGAATATTCCCAGCAGGATATCGAATTGATTCAAGCAATCCGAATCCCCAGGCATTTTGGAACTGTGGCTGTCAGTTGGTCGCACTTAATTACCAATCAAATGGAAGGATGATGCAATTGTACAAAGGACGATTCAAGTCAAATGGAAATTGTGGTTACGTCTTAAAACCAGACGTTATGTGTAAAGATGAACCAAAGTTTGATCCTATGACAAGGAGAGAAATCGTCGGAGTCCAGAGAAAAGTCTGCAAAATCAGGGTCATCAGTGGACAGCAACTACCAAAGCCTAAAGATAGCATATTGGGAGACCGAGGAGAGATAATTGATCCCTACGTTGAAATAGAAGTCGTAGGTATCCCGGCTGACAGCGGCAAGCGACGCACCAAAACAGTTATAGATAATGGCTTTAATCCAACCTGGGAGGAGACGATCACCTTCATTCTAACATTTCCAAGTCTCGCAATTTTTCGCTTTGTTGTCTGGGACGAGGATCCCATTGGCCGAGACTTTATTGGTCAGGTTACTTTGCCATTCTCAAGCGTCATGCAAGGGTATAGGCATGTGCACCTTGACGGAAATCAACAGGCATCTATTTTTGTTCAAGTGAACATCACAGACTACCATGGTGAAAAGATAGTGGAAGGCTTGGAATTACTTAATCATGGAAGAAGACCTTCAGGAGGAATCAAGTTCAAAAAGAGACAGAGGAGCAATTCGTGGCTCATGTGAGGAAAATCATTGTCAATCGAAATACGAAAAAGGAAATAAGTTACCGTGAAAATGTCAGGTGGACATCAGTCGTCAAAcgattttcaagtttcaagatTCAATCtgaaaaggtgtaaaatatggGCAGAGCGCATAACACTAGAATACAGAgttatatttacatgtatataacaatACGATTCGTGGAGATAGACTTGTTCAAGCAGATTTATTTGCCATTAGGAGATTCATGCTACTTGGGAAGcaatcacttttttaaaattaatattattgtattatttctGTTCCGTGAACGAAACTGATTCTCAGTCAGAGATCGCTATGAATCTATCTTCCAAACTGTTATAGTGATCCTTAAATAAACAAGGTATTTAGTTGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AP18	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2 OS=Mus musculus OX=10090 GN=Plch2 PE=1 SV=2
O75038	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2 OS=Homo sapiens OX=9606 GN=PLCH2 PE=1 SV=3
Q4KWH8	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-1 OS=Homo sapiens OX=9606 GN=PLCH1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000754 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16457 all species →	PH_12	Pleckstrin homology domain	Domain	Interproscan
PF00387 all species →	PI-PLC-Y	Phosphatidylinositol-specific phospholipase C, Y domain	Family	Interproscan
PF09279 all species →	EF-hand_like	Phosphoinositide-specific phospholipase C, efhand-like	Domain	Interproscan
PF00388 all species →	PI-PLC-X	Phosphatidylinositol-specific phospholipase C, X domain	Family	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR017946 all species →	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR001711 all species →	Domain	Phospholipase C, phosphatidylinositol-specific, Y domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR015359 all species →	Domain	Phosphoinositide-specific phospholipase C, EF-hand-like domain	Interproscan
IPR016280 all species →	Family	Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase beta	Interproscan
IPR000909 all species →	Domain	Phosphatidylinositol-specific phospholipase C, X domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR001192 all species →	Family	Phosphoinositide phospholipase C family	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10336 all species →	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0004435 all species →	Molecular Function	phosphatidylinositol phospholipase C activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0048015 all species →	Biological Process	phosphatidylinositol-mediated signaling	Interproscan
GO:0051209 all species →	Biological Process	release of sequestered calcium ion into cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068754271.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068754271.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.