Gene detail

Detailed information of XP_068754341.1 in Montipora capricornis

Genomic Location: chr6:30192509...30222756
NR annotation: XP_015754587.1, PREDICTED: uncharacterized protein LOC107334180 [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138051924

ATGGGAAGAAATCTTGTAGTTGCCATAGGATTAGCAAGCATCCTTTTGGTTCAAATTACGGGATCCTTGTCGGACATTGATGAGTGCTCAGAGTTGTTGAATGGTGGCTGTCATCAAGATTGTGTCAATACCCAAGGAAGCTTTAAATGCACTTGCCGGCCGGGCTTCCGACTTGTTTCCAATGAAAGTGGCTGCATTGAGGATGTTGTCATTTCATTCTCAAAGAGGCGATACCGCACATCGCTGTCAGTGAAAGCGGCACCTGGTGCCTCATTTTTAACAGTTCGTGCAACAGCAGACAACCCACAGATTCGTATCAGATACTTTATAAGATCGATAAACAACAAACCTTACAGTAGACAGACTGCATTATTTGAAGTGGACCCAGTAACAGGAACAATTTCCGTTCGTGGAGAGCTTAAGAAGAAAGCACGTTATCGTCTGCGAGTGGAGGCACGTATTAGTGACGACATTTTCGCTTCTACTTTCGTAATTATCAGAGTCGAGGCGGCGAATAAAATATTGAGTGCTGATCCTGATCAAAGTCTGAGATTTCCGAGTCCAATTTACTCCGTAATCATTCCATTTAACACGCCCGTGGGTCAGACCATTCTACATCTGAGAGTGGAAAAAAGCAAAAGGCGGAGCAACAGTGCTGTGCGATACAGGATAAATTCTTTTGATCCTTACCAAAAGAAAGCTCTTTTCAGTCTTGATCCATGGAAAGGCTCACTCAAAATCAGCAGGGAACTGCCACAGCTAGATAGCCCATATGACAAACCTGTCAACTTTGTATTACAAGTCGTTGCCAGGACTCAAGAAAATGAGCGGAATACCTTAACGGCCGCAACACGAGTTTCTATCGTGGTGGTACCAGAGTACCCTGGAAATGATTATGTGCAGTCATCGGTAGCAGTGGTTAAGAACACGTCAGAGGCTGTAGACAGCTCTCGGAGGCTGCGGTTTAATAAGAGTGCAACTTCGCGAGAGAGAACTGAGTTTTCTTTGCATCGTATGTTTCGTCGACTATCCCCTGAAGCTAAAAGAGTGTCCAAGGCAGACTTACGCTTCTGTGAAATCATACGAGAGTTAAAGCGAGAAGTGGCAGATCATCTGCTAGATGACCGCTCACGCACGGGGGCAGTTTCCGTGAGACTGGGCCCAAGCTCAATTGCTTCGGCTGGAAAATTGTCTGAGATCGTGAAAGAAGCAAACTGCAGCTTCCCCGAGGCCAACTGTTCCGATACAGAATATCACTCAAAATACCGAACATTTGATGGAACCTGCAACAATCTTGAAAATCCCCTATGGGGAGCGGCCGCCACACCATTCACCCGAATGTTGGATCCAGTCTACTATGATTCAAATGGTCTCTCAGATCCTGTTGGGTTCCCTGATCAGCCATTTGCGCCTCATCTTCCTTCGCCGCACCTTGTCAGCAAAGTGTTTTTCATTCACCTCAAAGAAGCCAATAGAAATGACAAACGCTACTCTCACATGCTTATGCAGTGGGGGCAATTCCTAGATCATGATATATCATTCACAGCAGAAAGTGAAGGGAGTGAAAAGTGTTTCTTGCCAAACTGTGACGGGTCATCAGTTGACTTTGAGCCTCCTTGCTATCCCATAATGTACCCAGACGGGTCTTCATGTACCATGTTTACTCGGTCAGCTGCTGCTTGCCAAACTGATAATGAAAACATAACACCAAGGGAACAACTTAACACAATCACGGCATTTATAGATGGATCTCAGATATATGGCTCGAGCAGCGAGGTTGCTCAGCGACTCAGAGATCCGAACTCAGGAAGAGGCCTCCTGAAGATATCTCGGCCAAGATACCTTCTTCCATTTGTGGAAACACCTTTCGATCCTCCTCTGAACTTGTGTCAGCTATTCGGTGGTTGTTTCGACGCTGGTGATTTTAGAGTCAACGAACAGATTGCCCTAGCGTCCATGCACACCTTATGGATCCGAGAACATAACCGAATAGCGGAGAGTTTGAGCCGATTGAATAAACACTGGGACACGGAAAAAGTCTATCATGAAACCAGAAAAATAGTGGGAGCGGTGCTTCAGCATATCACTTATAACCATTACTTGCCTAAAATTCTGGGCAATAACGCCTTGCCCGCCTACCGAGGATACGAAAATGTACACCCTGGTATCTTAAACGTATTTGCGACTTCTGCGTTTAGATTCGGTCATAGTATGGTAAGACCAAAGTTTGCTATGCTTGACGCCAATTACGATCCTGTTGCCCCAGATGTGCTTCTCAGAAATGCTTTTTTCAACAACAAACTTGTACAGAGAGAGGGCATTGAACCTGTGCTTCTTGGACTTCTAGCCAACGAATCGCTTGCTGTGAATCGGGAAATGGCGGCAGGATTGACGAAGCATCTTTTTCAGCAGCCAGAATCAGATCATGGCTTTGATCTTGCTGCGCTAAATATTCAACGCGGTCGTGACCATGGCCTTCCGGGTTACGGCGCATGGAGGCGCGAATGCAACTTATCTCACGCAGATATTTTTCAAGAAACAAATTTTGAAATTATAAATGCTACATCCCGACAGATACTTCACGAACTTTATGAAGATGTTGAGTACGCTGATCTGTGGGTTTCAGGCCTAGCAGAGGACCCTATTCCTGGAGCAATAGTTGGTCCCACCTTGCATTGCATACTGAAAGAACAATTTCGTCGTCTGCGTGATGGCGACCGTTTCTGGTTTGAGAGAAACGGAGTATTTTCAGATGAACAAGTTAAGGAGGTTCGAAAAACTTCGCTGTCTCGTATACTGTGCGATAACATATTTGGCATAGTTTCTGTTCAACGAGATGCTTTTATTGCAGCCACCAATGAACTTAAACGAGTTGAATGTACCGACATTCGTCAAATGGACTTGAGCAAATGGAAAGAAAATCAGCCCTCACCCCATCAAACGTTTGGCAGCTGGTCAGATTGGGTTTACACAGTAAGAAAATCCACAGGTTCATGGGCAGTTGCGAAAGCTGGTGATCTGTGCCCTGGTTCAGTAGTGGATATTGAATGCCAGCTTGCTGACGGTTCACCATCTAAATTGGCCGGTCAAGTGATTCATTGCAAAGAGAGGATTGGTGTGTACTGCAGGAACAGCGAACAGCTTGGGAACGACCCAGTGTGCGCTGATTACCGTTTCCGATTTCTGTGTGCCGACATCGAAAAGCCCCATCCACATGGATCGTCGAGTGCTCCAACGTCATCAACTTTTGAGATCAGCCCCAAACCACAATGCGACACACGGAGGTACCCTACCGCTTTTTCTTTACCCTTTGAAGTTGCTCAGCACGTCACAATTTCGCATGCGTACAAAACTGAACCACTATCTCAGTACATGATTGCTGGCAAGAAAAAGGGGCAATCCAAGATGCGTTTTCTGATGTCGTTTGACACACGGAAGATCCCACGAAGAGCTATTGTGCATTCTGCCAAGTTGTACGTTTACCTCGTTGACTTTGCAGCTAGTAATGGAGCTAATGAACCATCTGTAGTATATTCCAATTCTCTGGAGGTCTATCAGATTATAAGTACAGACTGGCATCCTGAGAACACTACTAGTGTTATACCATGGCATCAGAATTTCCTGGGGATTGGAAAGGATGTGGCAAAGAATAGACTGGCAGAGAGTGATAACCTCCAACCAGGAGAGCGGCAGCGATGGGTTCATCTGGATATTCAACATGCTGTTAGGAACTGGCAAATCAGACAGCAGCCAAATTATGGACTTATGCTCAAGATAAAGAAGGAATATAGTGCGAATGCAGTTATGAAATTTGCCTCTAGTGATCATCCACTTGAACATTTACATCCTAAACTTAAAGTATGTCTGACAATTCATCCATGGTAA

Transcript

rna-XM_068898240.1

ACAATGGGAAACATTCTGCCAAATAGTCACAAGAATATCCTGTCTTTTATCGGCAGTTCCGCTCGTTCTTCAGCCtagagtattattattattattataatttttttaaccctTAATGTCGGTTTGACGCAGTCAAATCGTCGTGCGTGTCCCTCGGGGTTACAAATGGATGTTGGGTCGACACGCCTTCAGCCTTCTGTCAGCATTTCGTGGTATTGTTAGCGCATCTCTGGCCAAAAGGAAGACAGAAGACTTGATAGGCCATGGGAAGAAATCTTGTAGTTGCCATAGGATTAGCAAGCATCCTTTTGGTTCAAATTACGGGATCCTTGTCGGACATTGATGAGTGCTCAGAGTTGTTGAATGGTGGCTGTCATCAAGATTGTGTCAATACCCAAGGAAGCTTTAAATGCACTTGCCGGCCGGGCTTCCGACTTGTTTCCAATGAAAGTGGCTGCATTGaGGATGTTGTCATTTCATTCTCAAAGAGGCGATACCGCACATCGCTGTCAGTGAAAGCGGCACCTGGTGCCTCATTTTTAACAGTTCGTGCAACAGCAGACAACCCACAGATTCGTATCAGATACTTTATAAGATCGATAAACAACAAACCTTACAGTAGACAGACTGCATTATTTGAAGTGGACCCAGTAACAGGAACAATTTCCGTTCGTGGAGAGCTTAAGAAGAAAGCACGTTATCGTCTGCGAGTGGAGGCACGTATTAGTGACGACATTTTCGCTTCTACTTTCGTAATTATCAGAGTCGAGGCGGCGAATAAAATATTGAGTGCTGATCCTGATCAAAGTCTGAGATTTCCGAGTCCAATTTACTCCGTAATCATTCCATTTAACACGCCCGTGGGTCAGACCATTCTACATCTGAGAGTGgaaaaaagcaaaaggcggAGCAACAGTGCTGTGCGATACAGGATAAATTCTTTTGATCCTTACCAAAAGAAAGCTCTTTTCAGTCTTGATCCATGGAAAGGCTCACTCAAAATCAGCAGGGAACTGCCACAGCTAGATAGCCCATATGACAAACCTGTCAACTTTGTATTACAAGTCGTTGCCAGGACTCAAGAAAATGAGCGGAATACCTTAACGGCCGCAACACGAGTTTCTATCGTGGTGGTACCAGAGTACCCTGGAAATGATTATGTGCAGTCATCGGTAGCAGTGGTTAAGAACACGTCAGAGGCTGTAGACAGCTCTCGGAGGCTGCGGTTTAATAAGAGTGCAACTTCGCGAGAGAGAACTGAGTTTTCTTTGCATCGTATGTTTCGTCGACTATCCCCTGAAGCTAAAAGAGTGTCCAAGGCAGACTTACGCTTCTGTGAAATCATACGAGAGTTAAAGCGAGAAGTGGCAGATCATCTGCTAGATGACCGCTCACGCACGGGGGCAGTTTCCGTGAGACTGGGCCCAAGCTCAATTGCTTCGGCTGGAAAATTGTCTGAGATCGTGAAAGAAGCAAACTGCAGCTTCCCCGAGGCCAACTGTTCCGATACAGAATATCACTCAAAATACCGAACATTTGATGGAACCTGCAACAATCTTGAAAatcccctatggggagcggccGCCACACCATTCACCCGAATGTTGGATCCAGTCTACTATGATTCAAATGGTCTCTCAGATCCTGTTGGGTTCCCTGATCAGCCATTTGCGCCTCATCTTCCTTCGCCGCACCTTGTCAGCAAAGTGTTTTTCATTCACCTCAAAGAAGCCAATAGAAATGACAAACGCTACTCTCACATGCTTATGCAGTGGGGGCAATTCCTAGATCATGATATATCATTCACAGCAGAAAGTGAAGGGAGTGAAAAGTGTTTCTTGCCAAActGTGACGGGTCATCAGTTGACTTTGAGCCTCCTTGCTATCCCATAATGTACCCAGACGGGTCTTCATGTACCATGTTTACTCGGTCAGCTGCTGCTTGCCAAACTGATAATGAAAACATAACACCAAGGGAACAACTTAACACAATCACGGCATTTATAGATGGATCTCAGATATATGGCTCGAGCAGCGAGGTTGCTCAGCGACTCAGAGATCCGAACTCAGGAAGAGGCCTCCTGAAGATATCTCGGCCAAGATACCTTCTTCCATTTGTGGAAACACCTTTCGATCCTCCTCTGAACTTGTGTCAGCTATTCGGTGGTTGTTTCGACGCTGGTGATTTTAGAGTCAACGAACAGATTGCCCTAGCGTCCATGCACACCTTATGGATCCGAGAACATAACCGAATAGCGGAGAGTTTGAGCCGATTGAATAAACACTGGGACACGGAAAAAGTCTATCATGAAACCAGAAAAATAGTGGGAGCGGTGCTTCAGCATATCACTTATAACCATTACTTGCCTAAAATTCTGGGCAATAACGCCTTGCCCGCCTACCGAGGATACGAAAATGTACACCCTGGTATCTTAAACGTATTTGCGACTTCTGCGTTTAGATTCGGTCATAGTATGGTAAGACCAAAGTTTGCTATGCTTGACGCCAATTACGATCCTGTTGCCCCAGATGTGCTTCTCAGAAATGCTTTTTTCAACAACAAACTTGTACAGAGAGAGGGCATTGAACCTGTGCTTCTTGGACTTCTAGCCAACGAATCGCTTGCTGTGAATCGGGAAATGGCGGCAGGATTGACGAAGCATCTTTTTCAGCAGCCAGAATCAGATCATGGCTTTGATCTTGCTGCGCTAAATATTCAACGCGGTCGTGACCATGGCCTTCCGGGTTACGGCGCATGGAGGCGCGAATGCAACTTATCTCACGCAGATATTTTTCAagaaacaaattttgaaattataaaTGCTACATCCCGACAGATACTTCACGAACTTTATGAAGATGTTGAGTACGCTGATCTGTGGGTTTCAGGCCTAGCAGAGGACCCTATTCCTGGAGCAATAGTTGGTCCCACCTTGCATTGCATACTGAAAGAACAATTTCGTCGTCTGCGTGATGGCGACCGTTTCTGGTTTGAGAGAAACGGAGTATTTTCAGATGAACAAGTTAAGGAGGTTCGAAAAACTTCGCTGTCTCGTATACTGTGCGATAACATATTTGGCATAGTTTCTGTTCAACGAGATGCTTTTATTGCAGCCACCAATGAACTTAAACGAGTTGAATGTACCGACATTCGTCAAATGGACTTGAGCAAATGGAAAGAAAATCAGCCCTCACCCCATCAAACGTTTGGCAGCTGGTCAGATTGGGTTTACACAGTAAGAAAATCCACAGGTTCATGGGCAGTTGCGAAAGCTGGTGATCTGTGCCCTGGTTCAGTAGTGGATATTGAATGCCAGCTTGCTGACGGTTCACCATCTAAATTGGCCGGTCAAGTGATTCATTGCAAAGAGAGGATTGGTGTGTACTGCAGGAACAGCGAACAGCTTGGGAACGACCCAGTGTGCGCTGATTACCGTTTCCGATTTCTGTGTGCCGACATCGAAAAGCCCCATCCACATGGATCGTCGAGTGCTCCAACGTCATCAACTTTTGAGATCAGCCCCAAACCACAATGCGACACACGGAGGTACCCTACCGCTTTTTCTTTACCCTTTGAAGTTGCTCAGCACGTCACAATTTCGCATGCGTACAAAACTGAACCACTATCTCAGTACATGATTGCTGGCAAGAAAAAGGGGCAATCCAAGATGCGTTTTCTGATGTCGTTTGACACACGGAAGATCCCACGAAGAGCTATTGTGCATTCTGCCAAGTTGTACGTTTACCTCGTTGACTTTGCAGCTAGTAATGGAGCTAATGAACCATCTGTAGTATATTCCAATTCTCTGGAGGTCTATCAGATTATAAGTACAGACTGGCATCCTGAGAACACTACTAGTGTTATACCATGGCATCAGAATTTCCTGGGGATTGGAAAGGATGTGGCAAAGAATAGACTGGCAGAGAGTGATAACCTCCAACCAGGAGAGCGGCAGCGATGGGTTCATCTGGATATTCAACATGCTGTTAGGAACTGGCAAATCAGACAGCAGCCAAATTATGGACTTATGCTCAAGATAAAGAAGGAATATAGTGCGAATGCAGTTATGAAATTTGCCTCTAGTGATCATCCACTTGAACATTTACATCCTAAACTTAAAGTATGTCTGACAATTCATCCATGGTAACCATTGCATATTAGCACTGCGTCAAGGTTGTTTTGCAGTGGAGCTCGGTGGAAATGCAATCTTTTAAACAGTGTAGATTGCCTGTGGTTTCACCTTCGTTTTATTAATCTAGGTCTCTTTATGTTAATATGTCACGCTTCTTTATCATAAAGCCTTTAATCAAAGAGAAGTTTAAATTTTGGAAGTCTGGCCCTAAGGATAGTCATCGTGGTTTAATCATATTGGGCACCATTGTAAGGGCCGTTTCGTTTCAGGGTGGAATAAATTAAAACTGAATCATGGTgtgcttaatcaataaatttcGTAGTTCTCATTACCTGTTTCATCACTGTAAAGATTTATTCGATACTGGAAGCTACAAAATAAATAACTCTTACGTCAATGATAAGAAAGAAAGTGTTTTTAGGGTGTTTTAATAGGATCTTATCCATGCCACGACTGCAGCTGCAGTGCTAAAGGACGTTTTGAACATAAGCCAATCGTTCAGTCAGAAAAATGAATAAACAGTTGAATTCCCATATTTGGAGTTACTTTGAATGCAAAATTCTGTGCCTTACAGATTCCTTGTCTCCGGCGAGCGTTTCTTTCAAATGGTATTGGACATTTCGTTATTAGAGAGTTTAAACAAGGACAACTTCAACATGAAACTTCAATGCAAAATATAGTTGAGCACTTTTGTAACGGCTAAGTatatttcacgattattccgTCCATTATAGTTAAtatatggagatggttatgaaactctacaagtttctttgttttatatttttgttaGCTGTTTTTGTcctgaccatgcacaaaccaccctcttttagtttctaaaaaagAGCCAATTAAGAGCTTCCATCAATTTATTCAAAACCCAGTTGTGAACCGAGGACCAAAAATTGTGCTGATGTCATGATCAAGTTCAATATGAACCGGGATgtcactgttctcgcttttgaagttgGCAGAGTTTCATGACCAGTCAATCTAAGGGAAAAACTTGAAGTTGCACCACGAAACTGTGAACATATTTTCTCATAGCACCTCTCGGTGGTGCCCACTCCACCTCCACCCACCATTCGGGaattacaataataacaacCTGCATCGAATGCTCTGCAAAGTCCTATTACAATTTATTACTAACGGAGActtttattataattactatTTATGGAGAAAAACGGTAGTCGTCTCGGTAAACGTTATTCGTCTATGTTCGATTGCCGAACATCTTTGGAGATCCATGCAGGGGCAGGGAGTAAGGACAAAGGAAAAGTTCGACCGAcagtcgaaaaaaaaattggatctACGACCTCGTTCACGTGATCGGGGCCCTGGGTCTAAGAGTAATGATGGCATAAGTACCAATATAATATCGTTCAGTTGCGATATATCCAACATCCTTATCGTGATAGATCCACAATTTCATTGTGGTTAATGCAAAATACGCGAGAAGTTAGTCATATCAATATCTACAATCTCATCTTCTTTTAGCAAGCAATGGCTGTACAAATTTTTCAGCCATTCTTGACAATATAGGCCTCCCCCCAAAtgtttcaaaataatattattttggtaTTTCTTGGCAATGTTTTATCTCCGCCTTTCCATATTTGGACCGGAATGAGATATCCGGAGACGAGTAATCGGGTCTTTCGATTGTTCTGCGATGCCCACCGTTTCCTTGGACATCGCTCCTGGTGGTATAACCATGATGTTGATTGATGTATGTGCATTTCGCTTTATACCTGCAGCGTCTCGAACAATAACAGTTGTTTTGAAGGACTTGGACGGAGTGAGATAACACAGGAGTAACAGACTCCTTTGGACTTTTATTTTTCCGTGATGCGTCATGTAAAAGTAATCTAATCTCTTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UQ28	Peroxidasin homolog OS=Mus musculus OX=10090 GN=Pxdn PE=1 SV=2
Q92626	Peroxidasin homolog OS=Homo sapiens OX=9606 GN=PXDN PE=1 SV=2
A4IGL7	Peroxidasin OS=Xenopus tropicalis OX=8364 GN=pxdn PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000313 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan
PF13330 all species →	Mucin2_WxxW	Mucin-2 protein WxxW repeating region	Family	Interproscan
PF00688 all species →	TGFb_propeptide	TGF-beta propeptide	Family	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR025155 all species →	Domain	WxxW domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001111 all species →	Domain	TGF-beta, propeptide	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR050702 all species →	Family	Peroxidase Activity and Reactive Species Generation	Interproscan
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11475 all species →	OXIDASE/PEROXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19511	PXDN, VPO1; peroxidase	EC:1.11.1.7	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068754341.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.