Gene detail

Detailed information of XP_068754477.1 in Montipora capricornis

Genomic Location: chr6:35329821...35925933
NR annotation: XP_015747636.1, PREDICTED: 50S ribosomal protein L20-like, partial [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3CRZ0	Large ribosomal subunit protein bL20 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=rplT PE=3 SV=1
A5CCZ4	Large ribosomal subunit protein bL20 OS=Orientia tsutsugamushi (strain Boryong) OX=357244 GN=rplT PE=3 SV=1
A9W371	Large ribosomal subunit protein bL20 OS=Methylorubrum extorquens (strain PA1) OX=419610 GN=rplT PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005439 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00453 all species →	Ribosomal_L20	Ribosomal protein L20	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005813 all species →	Family	Large ribosomal subunit protein bL20	Interproscan
IPR049946 all species →	Conserved_site	Large ribosomal subunit protein bL20, conserved site	Interproscan
IPR035566 all species →	Homologous_superfamily	Ribosomal protein bL20, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10986 all species →	39S RIBOSOMAL PROTEIN L20	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0005761 all species →	Cellular Component	mitochondrial ribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02887	RP-L20, MRPL20, rplT; large subunit ribosomal protein L20	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068754477.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

128.7Max TPM

60.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	60.46	128.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	128.71
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	91.53
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	90.60
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	88.18
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	86.85
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	86.19
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	85.84
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	85.30
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	81.43
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	81.34
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	80.88
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	79.86
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	78.21
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	76.54
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	76.14
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	74.38
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	72.72
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	71.31
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	70.67
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	69.74
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	69.39
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	65.99
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	65.97
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	65.77
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	65.63
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	65.39
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	65.17
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	56.94
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.