Gene detail

Detailed information of XP_068754641.1 in Montipora capricornis

Genomic Location: chr6:42123711...42144362
NR annotation: XP_029187195.2, probable RNA methyltransferase Y17G7B.18 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068898540.1

TTGCTAATAAATCAGCGGATAACATCAGCCAAATAGTTACCTAAAATATGAAGCACAAAATATCTCTCAAGCCCTCTACATCTGCGCTTGCGCAATGAAACAAATCTGGAACGACGAAAACACGTTGTGCAGCGCTAAGTGCCTTTGAAAGCTGTGAAAAAATAAGATAAGACGATGACTATGATTTGGtgttactgaaaaaaaaaaagatttgtatGGTTCCATAGAAGTCGCAGCATAAATCACCCGTTTGCAGTAGTGTTTTGATATCTCAAGTTGGGAAACGAGCTCGGTCCGTACAAAGTTTGCGCAGATTTTCCTTGGGTGTGAGAGCTCAAATTAACTATTGACAATCCCGACATCACAGACAAGAGATTGGAGCGGATTGGAAATAATTCTGCGTCTCATTTTGAGGTAGGAGTGGATTGGCAGCTCAGAGCTGATGTGCTCATGGAAAGCTTGGTTCTCCAAATAGGCGCATGATTTACTGAAGAAACTGAGACAAGATCcatataattaattaatgttttaTAACGGAACATACTTGTGCTTCCTGGGAACCTCAAGATGGCATCTAGGTTAAAAGAACAGCAGAGTCCGGTCAAAAGGAAATTCACCAGTCCCCTGGGGCATCAGAAATACGTCACCAAAGGGATTTCTCCGCGCTTCAAGGCAAATTTGAGAGAGTCTCGGTCCACCGGAACTGGAAAACAAGGAAAGCAAAAAGGAGACCTGGGACCTGGCCAAGCGAGGCCCTGGAGAAAACCCCAGGACAAAGGCCGGCCCAAGATTGTGCGGTTTCATTGTGGAGGAAATAGTGCTGATCCTTTGAACTTAAACAGTTTGATTGATCGTGACCCATCTGCTACCACACCCCAAGCATCTCCTTTGTCAGAGCACAGTGAATCGCCAGTGCAAGTTTTGGAACCACGTGACAAAACTGATCCTCTCAACCTTAAAGGTGTGGTACTTGAACCTGAAATTAAAGACCCCCATGTTGCAGTGAAAAAACGCAAGAAGAAGAAACGGCATAATGTCAATCATAGTAACTCTGAGAATGAGGGGAAGCCGAAGGAGCAGTTGAGCACTCAGTCAAGTGACAATGCAGATTCAGTCTCTGAAGgtaaacggaaaaggaaaagaaacactAATGAAACTGGAGAAGCAATTGAGGCTAAGGTTGATGCAAAGAGGTCTGGGAAATGTACCACTGTGTCAGCAGAGAGCAAAGGTCATGCTTCTTTGTTGACAGAAGATAGTGAACCAGCTGCAAAGAAGACGGCAGGTGTAATAATTTCAGATTCTTCCAAAGAGGCTGAAAGCAAGAGTGACATTGTGAAAACGGATGACTCAACTTTACAgggggaaaatgaaaacaattcttCCCTGAAAGCAAAAGACATTGGGAAATTCCATGGATTGAACGAAGGCAAGCATCCAAAAAGGGACAAACATTGCCAAGATGGAAAGCCAttcaagcaaaagaaacttttcattTATGGTAACTATAATAGGTATTATGGTTATCGCAATCCACATTGTAGTCAAGATTTGCGATTGAAATGCTTCAAGAAAGAATGGTTGGAAGGAAAAGACGTGTTAGACTTGGGATGTAATGTTGGGCATGTTACTCTAACCATTGCACGTGACTTTAGCCCACGAATTATCATGGGCATTGACATTGACACTGGGTTAATAAAAGCAGCAAAAAACAATTTACGGTATTATGTGAACAGTCCAGTCTCAGTGCCAGGAACATCTGAGCAAGGGGTGGATTTTCCATTGTCATTTTCTATTACAAGCGGGCCTCTGGCTGCTCCTGTGGTTCTGGACCTTGAGAAAGATGCCGGCTTTCCACATAATGTTGTCTTCAAGCAGGAAAACTATGTTCCAGATAGCAGTGAAGTCCTTTTGAAGCAAAAGCCCATGTATGATGTCATACTATGTTTGAGTCTCACAAAGTGGATTCATCTGAACTGGGGGGATGAAGGACTTAAACTCATGTTCAAGAGAATTTTCCTTCACCTGCGTCCTGGAGGAAAGCTCATCCTCGAGCCTCAGCCCTTCTCGTCttacaaaaagaagaagaatttgACAGAGAAGATCCGTGCAAACTATGATGCAATGAGATTTCGCCCTGAGCACTTTGTGGACTTCCTTCTCTCAGACTTAGTTGGATTTGCCACTTTTGAAGTTCTGGAGATTCCACAACACAAATCATCTGGATTTCAGCGACCTATGTACTTGTTTACCAAGCCTCCTGGTGTTCAAGAAGCACAATCAATGGAATTTCCCTGAGAGCTGGGAAATAAGGCTATTATTGAAAGAAGCGTGTTTTAAAGAATTCATTCATTTTAAATGTTTGACATTTTATGTATGTTAGTCATTCTtgattattttagttttatggGAAGTACAGGAGCCAATAAAATTGTAATAGCTGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K3A9	7SK snRNA methylphosphate capping enzyme OS=Mus musculus OX=10090 GN=Mepce PE=1 SV=2
Q7L2J0	7SK snRNA methylphosphate capping enzyme OS=Homo sapiens OX=9606 GN=MEPCE PE=1 SV=1
A3KQ55	7SK snRNA methylphosphate capping enzyme OS=Danio rerio OX=7955 GN=mepce PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006613 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06859 all species →	Bin3	Bicoid-interacting protein 3 (Bin3)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039772 all species →	Family	RNA methyltransferase Bin3-like	Interproscan
IPR010675 all species →	Domain	RNA methyltransferase bin3, C-terminal	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR024160 all species →	Domain	Bin3-type S-adenosyl-L-methionine binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12315 all species →	BICOID-INTERACTING PROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008171 all species →	Molecular Function	O-methyltransferase activity	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0017069 all species →	Molecular Function	snRNA binding	Interproscan
GO:0040031 all species →	Biological Process	snRNA modification	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15190	MEPCE, BCDIN3; 7SK snRNA methylphosphate capping enzyme	EC:2.1.1.-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068754641.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

42.4Max TPM

21.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	20.96	42.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	42.38
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	40.44
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	40.41
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	37.99
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	36.54
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	34.78
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	34.50
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	34.03
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	33.70
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	31.76
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	30.95
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	29.88
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	28.76
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	27.76
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	24.15
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	23.70
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	23.14
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	21.32
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	20.34
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	19.71
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	19.08
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	18.98
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	18.33
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	17.85
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	17.74
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	17.15
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	10.65
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	9.56
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	9.01
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.