Gene detail

Detailed information of XP_068754777.1 in Montipora capricornis

Genomic Location: chr6:45140613...45149783
NR annotation: XP_029187254.1, spermidine synthase-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64674	Spermidine synthase OS=Mus musculus OX=10090 GN=Srm PE=1 SV=1
P19623	Spermidine synthase OS=Homo sapiens OX=9606 GN=SRM PE=1 SV=1
Q9Y8H7	Spermidine synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=spe-3 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002572 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01564 all species →	Spermine_synth	Spermine/spermidine synthase domain	Domain	Interproscan
PF17284 all species →	Spermine_synt_N	Spermidine synthase tetramerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001045 all species →	Family	Spermidine/spermine synthases	Interproscan
IPR035246 all species →	Domain	Spermidine synthase, tetramerisation domain	Interproscan
IPR037163 all species →	Homologous_superfamily	Spermidine synthase, tetramerisation domain superfamily	Interproscan
IPR030373 all species →	Conserved_site	Polyamine biosynthesis domain, conserved site	Interproscan
IPR030668 all species →	Family	Spermidine/spermine synthase, eukaryotes	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR030374 all species →	Domain	Polyamine biosynthesis domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11558 all species →	SPERMIDINE/SPERMINE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006595 all species →	Biological Process	polyamine metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00797	speE, SRM, SPE3; spermidine synthase	EC:2.5.1.16	Glutathione metabolism	ko00480	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068754777.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

26TPM > 0

1Conditions

12.7Max TPM

4.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	26	4.12	12.66

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	12.66
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	12.61
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	12.45
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	10.75
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	8.79
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	7.66
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	7.27
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	7.00
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	6.87
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	6.70
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	5.82
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.98
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.96
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	4.80
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	4.72
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.47
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	4.26
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	4.19
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	3.31
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	3.15
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.78
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.68
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.91
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.62
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.35
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.66
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.