Genomic Location: chr6:49753077...49763221
NR annotation: XP_015769510.1, PREDICTED: uncharacterized protein LOC107348031 isoform X1 [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families
| CDS |
| LOC138052350 |
| Transcript |
| rna-XM_068898807.1 |
| Protein |
| XP_068754908.1 |
| UniProt accession | Description |
|---|---|
| A0A0A7LRQ7 | Polyglycine hydrolase OS=Epicoccum sorghinum OX=749593 PE=1 SV=1 |
| Q9KX40 | Esterase EstB OS=Burkholderia gladioli OX=28095 GN=estB PE=1 SV=1 |
| P17421 | Probable fimbrial assembly protein FimD, serogroup H1 OS=Dichelobacter nodosus OX=870 GN=fimD PE=4 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010468 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17660 all species → | BTRD1 | Bacterial tandem repeat domain 1 | Domain | Interproscan |
| PF00144 all species → | Beta-lactamase | Beta-lactamase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR049511 all species → | Repeat | Polyglycine hydrolase-like, tandem repeat | Interproscan |
| IPR012338 all species → | Homologous_superfamily | Beta-lactamase/transpeptidase-like | Interproscan |
| IPR001466 all species → | Domain | Beta-lactamase-related | Interproscan |
| IPR050491 all species → | Family | Bacterial Cell Wall Synthesis and Modification | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46825 all species → | D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH | Interproscan |
XP_068754908.1. This gene does have a gene model — the search simply returned no hit.XP_068754908.1.Transcript abundance of XP_068754908.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Polyps | 36 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM,
StringTie quantification over 36 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
