Gene detail

Detailed information of XP_068755313.1 in Montipora capricornis

Genomic Location: chr6:58868152...58884256
NR annotation: XP_029187099.2, 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35738	2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus OX=10116 GN=Bckdhb PE=1 SV=3
Q6P3A8	2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus OX=10090 GN=Bckdhb PE=1 SV=2
P21953	2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=BCKDHB PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004764 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02780 all species →	Transketolase_C	Transketolase, C-terminal domain	Domain	Interproscan
PF02779 all species →	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033248 all species →	Domain	Transketolase, C-terminal domain	Interproscan
IPR009014 all species →	Homologous_superfamily	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR005475 all species →	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42980 all species →	2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005947 all species →	Cellular Component	obsolete mitochondrial alpha-ketoglutarate dehydrogenase complex	Interproscan
GO:0007584 all species →	Biological Process	response to nutrient	Interproscan
GO:0009083 all species →	Biological Process	branched-chain amino acid catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00167	BCKDHB, bkdA2; 2-oxoisovalerate dehydrogenase E1 component subunit beta	EC:1.2.4.4	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068755313.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

126.1Max TPM

38.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	38.63	126.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	126.10
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	90.89
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	56.18
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	51.48
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	49.39
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	48.97
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	48.03
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	47.10
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	46.83
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	46.64
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	46.57
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	46.35
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	45.71
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	44.67
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	44.33
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	43.74
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	43.72
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	42.73
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	42.27
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	41.29
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	39.77
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	38.77
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	38.12
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	37.67
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	36.71
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	36.08
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	32.82
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	27.06
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	26.71
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	23.98
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.