Gene detail

Detailed information of XP_068755322.1 in Montipora capricornis

Genomic Location: chr6:58891193...58893047
NR annotation: XP_015764235.1, PREDICTED: protein FAM46C-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZUP1	Terminal nucleotidyltransferase 5C OS=Danio rerio OX=7955 GN=tent5c PE=2 SV=1
Q5ZL95	Terminal nucleotidyltransferase 5C OS=Gallus gallus OX=9031 GN=TENT5C PE=2 SV=1
Q5XIV0	Terminal nucleotidyltransferase 5C OS=Rattus norvegicus OX=10116 GN=Tent5c PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009157 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07984 all species →	NTP_transf_7	Nucleotidyltransferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012937 all species →	Family	Terminal nucleotidyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12974 all species →	PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0048255 all species →	Biological Process	mRNA stabilization	Interproscan
GO:1990817 all species →	Molecular Function	poly(A) RNA polymerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23034	TENT5C, FAM46C; terminal nucleotidyltransferase 5C	EC:2.7.7.19	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068755322.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

113.4Max TPM

71.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	71.41	113.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	113.39
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	111.27
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	107.68
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	107.25
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	105.36
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	101.84
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	100.56
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	98.10
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	97.55
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	96.47
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	96.32
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	95.72
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	91.37
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	85.80
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	85.38
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	82.48
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	81.26
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	80.18
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	79.18
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	78.81
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	78.61
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	76.80
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	76.16
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	75.97
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	71.33
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	68.48
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	64.14
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	64.12
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	63.45
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	35.67
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.