Gene detail

Detailed information of XP_068756402.1 in Montipora capricornis

Genomic Location: chr6:71146683...71152521
NR annotation: XP_029192042.2, tryptophan--tRNA ligase, mitochondrial-like isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CYK1	Tryptophan--tRNA ligase, mitochondrial OS=Mus musculus OX=10090 GN=Wars2 PE=1 SV=2
Q9UGM6	Tryptophan--tRNA ligase, mitochondrial OS=Homo sapiens OX=9606 GN=WARS2 PE=1 SV=1
Q3T099	Tryptophan--tRNA ligase, mitochondrial OS=Bos taurus OX=9913 GN=WARS2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004173 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00579 all species →	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002306 all species →	Family	Tryptophan-tRNA ligase	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR024109 all species →	Family	Tryptophan-tRNA ligase, bacterial-type	Interproscan
IPR002305 all species →	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR050203 all species →	Family	Tryptophan--tRNA ligase	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43766 all species →	TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004830 all species →	Molecular Function	tryptophan-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006436 all species →	Biological Process	tryptophanyl-tRNA aminoacylation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0070183 all species →	Biological Process	mitochondrial tryptophanyl-tRNA aminoacylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01867	WARS, trpS; tryptophanyl-tRNA synthetase	EC:6.1.1.2	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068756402.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

23.1Max TPM

9.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	9.54	23.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	23.09
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	22.38
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	18.79
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	17.22
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	16.23
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	14.39
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	14.36
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	13.39
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	12.93
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	12.86
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	12.35
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	12.20
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	11.89
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	11.67
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	11.26
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	11.13
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	11.10
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	10.86
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	10.44
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	9.87
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	9.82
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	9.55
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	9.50
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	9.48
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	9.23
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	8.92
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	8.37
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.