Gene detail

Detailed information of XP_068757002.1 in Montipora capricornis

Genomic Location: chr6:72363933...72384804
NR annotation: XP_015775378.1, PREDICTED: utrophin-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138054459

ATGGCCACGAATGAAGACTACATACCCTTGGAAGCCGGCCAGATAAAAAGGCACAAGAGAATCTGCACTAAATGGATCAACGTGCAGCTGGCTAAGGCGAACCCTCGCATCGAAGTTACGGATTTTGTTGGTGAATTGAGAGATGGCCTGGTGCTCATTTCGCTTCTCGAAGTGCTTCTTGGGGTTCACGTGACCAGGGCTGAGCCATGCAGTAAGCGAATTAACCAAATTAGGAATGTGCAAGAGGTCATGCGCCTTCTACTACATTACAATGTTAGTTTAGTTAAACCAACAGGCATAATCGCCAGTGAAATTACAGCGGGAGACGAAAAAGCTATTCTCGTCTTGGTGTGGAGCATTATTCTGCGTTTTCAGATAAACGAAGCCATCAAACCGGATCCTGAAGATTTCAGTGTGGACAAAAAGTTGATTGCCTGGTGTCAGGGGCAGATAAAAGGAAACAGTAAGAATAGAGATGTTTCTGATCTAACAAGCAGCTGGGCGGATGGCTTACTGCTAAATTTGATTCTCCACTCCTTCAATCCTTCTTTGGTTGAAATCGAGGCGATCTGTTTAATGGGCGTGAATAAACGCCTTACGCATGCTCTTGACCTGGCAAGTGCAACCTATGACGTGCCGTCTCTATTTAAGGCTGAAGATTTCAACACCGATATACCGGATAAGAGGGTGATCACATTGTTCCTATCGTATTTATACCTGTATCAAGTTTCCAGATCTGGAGAGAGAACTATTGTGACAACTGAGAAGGAAGAGGCAATACAACCCACACTGAAGGTTGAATATGAATTGAAGACAATAACGTCACATCAGCAAACATCGCAATCATCAAGCACCACTCAGCATGATCAGTTTCAATCCATCACCACCTACACCCGTGACCAAAAGAGCAATGACGTATTTCATGACGCCACATCCGTCAAAGACGCTGGAGAAGACAGAATACTTCATATTTCCGGTTTTCCACAAAGCATTCATATTCAAGAGAAACGAGCTCTTGTGGTGTCACCATTTCGAATACCCAACCCACTTTCATCGAGAAGTTCAAGTTTATCGGATACTTTTAGTCCAATATTTTCAACATCGAAAGAATCAGACGGAGATAAGGCTCAAGAATTTCCGTCAGAAAGAGAAACAAGTCTAACGATGAAAGAAGTAAATGACAATGAAGATGACGACAGCGAAGAATTTTCGGAGGACAAGAAAGAAGACAAGCAAAACAAAGAAGATAAAACACGAAGTTTGTTGATATCGACTGAAAAGAACACAGAACTATCTGATGAGCCAAATGAAACTGATTCAGTTACTGAGGAGGATATTGCAAAGGATGAGGAAGATAATGGCCCAGTTCAATATTTTCAATCTCACACAAACGGTTCCTCCCATTCAAGCTCTCCCGATTGCATGAATTATCTGAGGCAGGAGCTTGACGCTGTGGATCAGAGTTTGTTTGAACTGGAACACAGCTTAAAACACTCAGACAAAGATCTGATGGACTTAAACACTACTAAGAGTGCTTTGGATCATCACAAAGAAGTGCTCTTTCAGTTGGAATCTGTCGAATCCAAATTATATGATATCCTGGAGGAAGGAAAGGGGTTAATTACTGAGAAACAGTTTGACAAGCCACAGGAAGATTACTTCAACGACACAATGGATGCCACAGAGGCCAAACTGAAAAGGCTTGAGGCAAATATTAACACAGAATACGACAGATTGTTTGACCTTTATATAATTTTACTCAATCAACACTTGGAGCGGATGAATGATTGGCTGCTGCGTGCAGAGTCCCGGATGGCACTTGACGACGTCATAGAGCCAACACACAAGGGCGTAAGGCAACAAGTCGCCGATCATCAGGGCTTTCAAGAGGAACTTTCAAATTACTCGATGGTAAACATGATACTGGAAATGGATTTGGAAGATCCTGCAATAGATGAAACAATCAGAGATTGGGTTAAGGTTTTAAGCGAGCGTTGGGCGGCCGTGTGGACCTGGGCTGAGGAATGGAAGGAGAAGTTGACCCAGAGCCTTCTCGACTGGAATAAGTTCCGTGAGGAAGAAACATATGTTCTGGGTTTGCTATCTGACAAAGAAAACACTCTGAGTGCGATTGGCGAAACAGATATCACAAACGATGAACAAGTTACAACACATCTAAATTTGCTGGAGACACTCGAGATCGAGATGGAATCTCAAGGAACAAAACTGGAATCATTGCATTACACAGGAGAACAGCTTATAAAAGATGCTGATTACTACAATTCTAAAGCTAAGGGAATAAGAGATCAAATAGAAGACTTTAACAAATGCTGGGCGGACATTTTTAAGTTCGTTAAGGACAGAAAGGAAATGCTAGAGGACGCCCAAACTTGGGTGAAGCAGATGGGACTCTTAATGAAAGAAGTGCGATCTTGGCTGGATGAAACAGAGATGATTTTAAAATTTTTACAGGAAGAAAAGGATCCGTCTAATGAAAACAAAATCCATGAAACAATCGAGCTGAAGTGTGAGGAAAGAGATCAAAACCAAATAAAGGTTGACGAGATCAAGCAGTTGGAGGATGCTCTATGCAAAACCATCGATACCACATCAACTTATTACATAAAAAGAGTCACTAAAACACTGTACAAGCGATGGGACGACGCAAGCAGCTCTCTCTGCAGATATCGCAACGGAGACTACCCATTTTTCGAGCAGGATGGCTGCTTTTTTATTAAGTATCTAAAGGAATTGAAAAAATCTAAAAATTCATGA

Transcript

rna-XM_068900901.1

ATTGCCATCACGGCAAATATTCAGCATGTTTAATTCCACACTAGTTAACAAACCTTAGAGCATAAATACCATTAGATCTCACCAAAAGACAACGTTGACATTATCCATACATCCATCACAAGGGTAAAAAAAACATGGAGTCAGGTTCTTCATTTAAGAATCCCTGATCGACAGTTTTGAATTGCACGAACCTCGAGGGAAAGTAGCTATCAATAATCTTACAATCGGATAATGCGAGGAAGCTGACTTGCAAAGGATAGAAAATGGCCACGAATGAAGACTACATACCCTTGGAAGCCGGCCAGATAAAAAGGCACAAGAGAATCTGCACTAAATGGATCAACGTGCAGCTGGCTAAGGCGAACCCTCGCATCGAAGTTACGGATTTTGTTGGTGAATTGAGAGATGGCCTGGTGCTCATTTCGCTTCTCGAAGTGCTTCTTGGGGTTCACGTGACCAGGGCTGAGCCATGCAGTAAGCGAATTAACCAAATTAGGAATGTGCAAGAGGTCATGCGCCTTCTACTACATTACAATGTTAGTTTAGTTAAACCAACAGGCATAATCGCCAGTGAAATTACAGCGGGAGACGAAAAAGCTATTCTCGTCTTGGTGTGGAGCATTATTCTGCGTTTTCAGATAAACGAAGCCATCAAACCGGATCCTGAAGATTTCAGTGTGGACAAAAAGTTGATTGCCTGGTGTCAGGGGCAGATAAAAGGAAACAGTAAGAATAGAGATGTTTCTGATCTAACAAGCAGCTGGGCGGATGGCTTACTGCTAAATTTGATTCTCCACTCCTTCAATCCTTCTTTGGTTGAAATCGAGGCGATCTGTTTAATGGGCGTGAATAAACGCCTTACGCATGCTCTTGACCTGGCAAGTGCAACCTATGACGTGCCGTCTCTATTTAAGGCTGAAGATTTCAACACCGATATACCGGATAAGAGGGTGATCACATTGTTCCTATCGTATTTATACCTGTATCAAGTTTCCAGATCTGGAGAGAGAACTATTGTGACAACTGAGAAGGAAGAGGCAATACAACCCACACTGAAGGTTGAATATGAATTGAAGACAATAACGTCACATCAGCAAACATCGCAATCATCAAGCACCACTCAGCATGATCAGTTTCAATCCATCACCACCTACACCCGTGACCAAAAGAGCAATGACGTATTTCATGACGCCACATCCGTCAAAGACGCTGGAGAAGACAGAATACTTCATATTTCCGGTTTTCCACAAAGCATTCATATTCAAGAGAAACGAGCTCTTGTGGTGTCACCATTTCGAATACCCAACCCACTTTCATCGAGAAGTTCAAGTTTATCGGATACTTTTAGTCCAATATTTTCAACATCGAAAGAATCAGACGGAGATAAGGCTCAAGAATTTCCGTCAGAAAGAGAAACAAGTCTAACGATGAAAGAAGTAAATgacaatgaagatgacgacAGCGAAGAATTTTCGGAGGACAAGAAAGAAGACAAGCAAAACAAAGAAGATAAAACACGAAGTTTGTTGATATCGACTGAAAAGAACACAGAACTATCTGATGAGCCAAATGAAACTGATTCAGTTACTGAGGAGGATATTGCAAAGGATGAGGAAGATAATGGCCCAGTTCAATATTTTCAATCTCACACAAACGGTTCCTCCCATTCAAGCTCTCCCGATTGCATGAATTATCTGAGGCAGGAGCTTGACGCTGTGGATCAGAGTTTGTTTGAACTGGAACACAGCTTAAAACACTCAGACAAAGATCTGATGGACTTAAACACTACTAAGAGTGCTTTGGATCATCACAAAGAAGTGCTCTTTCAGTTGGAATCTGTCGAATCCAAATTATATGATATCCTGGAGGAAGGAAAGGGGTTAATTACTGAGAAACAGTTTGACAAGCCACAGGAAGATTACTTCAACGACACAATGGATGCCACAGAGGCCAAACTGAAAAGGCTTGAGGCAAATATTAACACAGAATACGACAGATTGTTTGACCTTTATATAATTTTACTCAATCAACACTTGGAGCGGATGAATGATTGGCTGCTGCGTGCAGAGTCCCGGATGGCACTTGACGACGTCATAGAGCCAACACACAAGGGCGTAAGGCAACAAGTCGCCGATCATCAGGGCTTTCAAGAGGAACTTTCAAATTACTCGATGGTAAACATGATACTGGAAATGGATTTGGAAGATCCTGCAATAGATGAAACAATCAGAGATTGGGTTAAGGTTTTAAGCGAGCGTTGGGCGGCCGTGTGGACCTGGGCTGAGGAATGGAAGGAGAAGTTGACCCAGAGCCTTCTCGACTGGAATAAGTTCCGTGAGGAAGAAACATATGTTCTGGGTTTGCTATCTGACAAAGAAAACACTCTGAGTGCGATTGGCGAAACAGATATCACAAACGATGAACAAGTTACAACACATCTAAATTTGCTGGAGACACTCGAGATCGAGATGGAATCTCAAGGAACAAAACTGGAATCATTGCATTACACAGGAGAACAGCTTATAAAAGATGCTGATTACTACAATTCTAAAGCTAAGGGAATAAGAGATCAAATAGAAGACTTTAACAAATGCTGGGCGGACATTTTTAAGTTCGTTAAGGACAGAAAGGAAATGCTAGAGGACGCCCAAACTTGGGTGAAGCAGATGGGACTCTTAATGAAAGAAGTGCGATCTTGGCTGGATGAAACAGagatgattttaaaatttttacagGAAGAAAAGGATCCGtctaatgaaaacaaaatccaTGAAACAATCGAGCTGAAGTGTGAGGAAAGAGATCAAAACCAAATAAAGGTTGACGAGATCAAGCAGTTGGAGGATGCTCTATGCAAAACCATCGATACCACATCAACTTATTACATAAAAAGAGTCACTAAAACACTGTACAAGCGATGGGACGACGCAAGCAGCTCTCTCTGCAGATATCGCAACGGAGACTACCCATTTTTCGAGCAGGATGGCTGCTTTTTTATTAAGTATCTAAAGGAAttgaaaaaatctaaaaattCATGAAAGAGGATATATGTTGCaataaaaaagatgattttaacacTGAACAGCATCCGTTGGCCACCAGATCAGCGGAGGAGATTGATCTACGCTGTAGCCCTTCAAAAACCAAACACTAACTTTCTCGGTTTTTGCGCGAAATGATTTGCGAAGAACAGTCTTGCACTCGAGGAAAACGAACAAAACTTACCTCTATATTTTTTAACAACTggtatttttatttacattttgtaatttataaACTACATTTTAAAGTATGCAGCCTTCCTGGAAAACAGCCTGTACAAGTTGAGCGAGGTTGCTGAATACAAATAAGGTTGATGTATGcatgtgtatgtatatatgtatgtatgtaaggcCGTTGTATGTTTTATCCATCGACCAAACCACACAGCCCGTTCACACTGTCCTTTGTCTCTAGCTgtgaaaaacacgttttaattTTGTCAAGCACTAGCTAAACTACgctcaaataattttcaaataGGTTATAAGAAAACACAATGCTCTAAATGTCTTTATAGTTCACcgctaaattttctccgattcttattggtttaaattgatcacgtgacgcgatagtgttcgcggagagacactatcagcccatagtgcccgtccgaggaaaatacccggatggatagtagtcgtccgctgaaaatacctctgtaaacaaggcggccttatggaaaataaacaatcgaaattgtattaagagagtttttgtttgttttctttttcaaattttacattggctgacacggctttcgtctaataaagttgaaaataattcaacatgatttttgagctggcgcgcggaagaaaatttagtagtgatcaataaagacaatagagtgtttatgtctcggaactatcggtctgatagttgccccttggaaatttgatgttcttaaaactagcatatttgccctcgaagcttcgcttctcgggcaaatatttgttttaagaacatcaaatttgcGCGCGgaaactatcagccgatagttcctcgacagaaacacgctattgtttaaatagtacTCGCTGTCTTAGTACGTGAATTAATTGCAGAGGAAAGAGCgtgctaaaaaaaattaaagcactTCGTTTGACTTCGAAGAATCCATATTAGGCGTCTCCGCGCGATATATCATGGCGTACCCAAGGGAGTCTTGCTCGAATGCGCAAAATGTCTCTGATCTAATGAGGCGTTTTTGAGAACATCTTAGCCAGTCACATTGTGATATAATCATCCGATTTGTTCTCAGCCAATGAAATTTTGGTATTTTAGGCAGAAAGGAATGACAGGTGTTACGTAATTTCAGTTTGGGCGTTTGTGCGGAACAAATGTGACTTTAAAGTCTCCACCttgatatttatttattcactgCTTAAAACATAGCGTTCAAGGACGGAGAAATAACTCAGTCAGCATAAGtttctaaaaaagaaaatgaagggAATTGGTAAAGTTCGTCGACTGCTAAATCATATGGAGTACTTCTTGGACGAATATGAACATTACAACTTCGATCCTGTGGCAACAACGTTAAGCCATTCCAGAAAAGGGCGATCAAAGAAAGAGGCAAGTTTGAATACGAATAGACCTATCCCATCTGGCCATGAGCGGAAAGTTCTGACAAAGCTTCAAAATgcggaaaaaaagaagaaggaacGTAATATCAGGGTGACTAGAAAGTGATCAAGGTTTATTGATTTTCATTGCAACCAAGGAAGGAATCGAGTAAAAACTTAAGATGCAGTCCATTCAAAACAGAAGCCAAGAAAGCTACAAGAATCTGGGGTACAGTTGGATTCGTTCCCTGATTACAAAGTGATTCATGTCTGTTGTATTTACTTGTCGTTTAATCAAAATATCCAAGTCGTCAGATATGCCTCCTCCTCTCCGCAAGTAAAACATCAGGTTGAGTGTGGCTAGCATATGCAGCGCGGAAGACTAATtatattcattcatttgttgtAGGGAGCTAATTATTTGCAAGCGTTATCTTCTGCTTAGTATTTATTAAGTCTCTTTTGTCAGTACTTAAGCCATAATTTTCATCCCCTTTTTTTGATAAACATGCGAACAAACTGGTACCTGCTATAGAGCACGCTGGCGTATCATTGTTGTTCTGcagcttaaaattaaaaaaaacacacacacacttcAGTTCATCTGAGGCGACGAGAGTTTTCTTTGTGCAACCTTGCTGtttaaaaataaagaataaGTTTGGTAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P15508	Spectrin beta chain, erythrocytic OS=Mus musculus OX=10090 GN=Sptb PE=1 SV=4
A5D7D1	Alpha-actinin-4 OS=Bos taurus OX=9913 GN=ACTN4 PE=2 SV=1
O43707	Alpha-actinin-4 OS=Homo sapiens OX=9606 GN=ACTN4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001145 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030018 all species →	Cellular Component	Z disc	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0055001 all species →	Biological Process	muscle cell development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068757002.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068757002.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

10.4Max TPM

2.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	2.11	10.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	10.41
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	7.30
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	6.71
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	5.42
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	5.35
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.54
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.45
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.01
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	3.53
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	3.04
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	2.43
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	2.27
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	2.19
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	2.19
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	2.01
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	1.39
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.16
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.01
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	0.99
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	0.94
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.89
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.84
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.71
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.62
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.61
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.58
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.47
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.